Ruminococcus bicirculans (ex Wegman et al. 2014): RBI_I01165
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Entry
RBI_I01165 CDS
T03158
Symbol
gcdB
Name
(GenBank) sodium ion-translocating decarboxylase, beta subunit
KO
K20509
carboxybiotin decarboxylase [EC:
7.2.4.1
]
Organism
rus
Ruminococcus bicirculans (ex Wegman et al. 2014)
Pathway
rus00362
Benzoate degradation
rus00620
Pyruvate metabolism
rus00650
Butanoate metabolism
rus01100
Metabolic pathways
rus01120
Microbial metabolism in diverse environments
Brite
KEGG Orthology (KO) [BR:
rus00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00620 Pyruvate metabolism
RBI_I01165 (gcdB)
00650 Butanoate metabolism
RBI_I01165 (gcdB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
RBI_I01165 (gcdB)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rus02000
]
RBI_I01165 (gcdB)
Enzymes [BR:
rus01000
]
7. Translocases
7.2 Catalysing the translocation of inorganic cations
7.2.4 Linked to decarboxylation
7.2.4.1 carboxybiotin decarboxylase
RBI_I01165 (gcdB)
Transporters [BR:
rus02000
]
Other transporters
Primary active transporters [TC:
3
]
RBI_I01165 (gcdB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OAD_beta
Motif
Other DBs
NCBI-ProteinID:
CCO04878
UniProt:
A0ABP1WGH5
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All DBs
Position
I:1310512..1311735
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AA seq
407 aa
AA seq
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MSIINSFLDTMASLASQSGFAGFLVDGGWKNIIMILISFVFMYLAIAKGFEPLLLLPISF
GMLLTNLPYAEMYHPDFWNYKTVAGNDHYIDYGQILQKGGLLDILYMGVKLQIYPPLIFL
GIGAMTDFGPLIASPKSFLMGAAAQGGIFFTFIGAALFGMSAAECGSIAIIGGADGPTSI
YVSSRLLTSNSNIGVGTIALAAYTYMALVPIIQPPIMKALTTKKERSVVMGQLRPVSKVE
KLIFPILVTIVISLMVPSAAPLVGMLMFGNLLKESGVCDRLVKTAQNELMNIITIFLGVT
VGATTQADKIMNIQFAEVMALGVVAFSIGTACGVLLGKLMYVLSGHKINPLIGSAGVSAV
PMAARISQKVGQQEVPTNYLLMHAMGPNVAGVIGSAVAAGVLLTIVR
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgtcaataattaattcatttcttgataccatggcgtctttggcgtcacagtcgggtttt
gcgggtttcctcgtagacggcggctggaaaaatatcataatgatacttatttcattcgta
tttatgtatctggctattgcaaagggctttgagccgcttctgcttttgcctatctcattc
ggtatgctgcttacaaacctgccatacgctgagatgtatcatccagacttctggaactac
aaaacggttgcaggcaatgaccactatatagattacggtcagatacttcaaaagggtggt
ctgttggatattctttacatgggcgttaagcttcagatctatccaccactcatattcctt
ggaatcggtgcaatgacagactttggtccgctgatcgcaagccctaagagctttcttatg
ggtgctgctgcacagggcggtatcttctttacattcatcggtgcggctctcttcggcatg
agtgctgctgagtgcggttctattgctatcatcggcggtgctgatggtcctacatctatt
tatgtatcttcaagacttctaacctcaaacagtaatatcggcgttggtactattgcactt
gcagcctatacatatatggctcttgttcctattatccagccgcctatcatgaaggctctt
acaacaaagaaagagcgttctgtagtaatgggtcagctaagacctgtttctaaggtagaa
aagcttattttccctatcctcgtaactatcgttatctcactcatggttccttcagcagct
ccactggttggtatgctcatgtttggtaaccttcttaaagagagtggcgtctgcgacaga
cttgttaagactgctcagaacgagcttatgaacatcatcactatcttccttggtgtaaca
gttggtgcaacaacacaggcagataagatcatgaacattcagtttgcagaagttatggca
cttggcgttgtggcattctcaattggtacagcctgcggcgtacttcttggtaagcttatg
tatgttctttcaggtcacaagatcaatcctcttatcggttcagcaggtgtatctgccgtt
ccaatggcagctcgtatctctcagaaggtcggtcagcaggaagttcctacaaactatctg
ttgatgcacgctatgggtcctaatgttgccggcgttatcggttcagccgttgctgctggt
gttcttcttacaattgtaagataa
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