Ruminococcus bicirculans (ex Wegman et al. 2014): RBI_I01199
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Entry
RBI_I01199 CDS
T03158
Symbol
trmU
Name
(GenBank) tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
KO
K00566
tRNA-uridine 2-sulfurtransferase [EC:
2.8.1.13
]
Organism
rus
Ruminococcus bicirculans (ex Wegman et al. 2014)
Pathway
rus04122
Sulfur relay system
Brite
KEGG Orthology (KO) [BR:
rus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04122 Sulfur relay system
RBI_I01199 (trmU)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rus03016
]
RBI_I01199 (trmU)
Enzymes [BR:
rus01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.1 Sulfurtransferases
2.8.1.13 tRNA-uridine 2-sulfurtransferase
RBI_I01199 (trmU)
Transfer RNA biogenesis [BR:
rus03016
]
Prokaryotic type
tRNA modification factors
Thiolation factors
RBI_I01199 (trmU)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_Me_trans
tRNA_Me_trans_C
tRNA_Me_trans_M
Arginosuc_synth
QueC
ThiI
NAD_synthase
DUF7411
Motif
Other DBs
NCBI-ProteinID:
CCO04912
LinkDB
All DBs
Position
I:complement(1342744..1343814)
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AA seq
356 aa
AA seq
DB search
MADKVLVAMSGGVDSSVSVKLLLDEGYDVAGATMRLYSNEDIGLDKTRTCCSLNDVEDAR
FVAFKLGIDFHVFNFSDDFKHYVIDNFVDTYLAGGTPNPCIECNKHLKFAKFYERAKLLG
FDHIATGHYAAREFDEKSGRWLLKRSPDRSKDQSYVLYSMTQEQLAHTLFPVGEMHKDKI
RDIAEENKLINANKPDSQDICFIPDGDYAGFITKRCGEQQSGDIVLSDGTKLGKHKGLIH
YTIGQRKGVGISYSEPLFVITKDMEHNRLIMGKADEVYSDSLVAGDVNFIPFDTLTEPIT
CTAQTRYHQKDAECTVSPMNDGKVLVTFKEPHKAISKGQAVVFYDGEYVIGGGTIL
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaagttcttgtggcaatgagcggcggcgttgacagctctgtttcggtcaag
ctccttcttgatgagggttatgacgtggcaggggctaccatgcggctctacagcaatgag
gacatcggtctggataaaacaagaacgtgctgttctctcaatgatgtagaggacgcacgt
tttgttgcttttaaactaggcattgatttccatgtattcaatttttctgatgattttaag
cactatgttatcgacaattttgttgatacatatcttgcaggcggcacgcctaatccgtgt
atcgagtgcaacaaacatctgaaattcgcaaaattctatgagcgtgcaaagctgctgggt
tttgaccatatcgctacaggacattacgctgccagagagtttgatgaaaagtcaggcagg
tggctgctcaagcgctcacctgacaggtcaaaggatcaaagttatgtgctttacagcatg
acgcaggaacagcttgctcacactctcttccccgttggcgagatgcacaaggacaagatc
cgtgatatcgcagaagaaaataagcttataaatgcaaacaagcctgactctcaggacatc
tgttttatccctgacggtgattacgcaggctttatcacaaaacgctgcggtgaacagcag
tcgggagatatcgttctttctgacggcacaaagcttggtaaacacaaaggtctgatacac
tatactattggacagcgaaagggcgtaggcatttcatatagcgaaccgcttttcgttatt
acaaaagatatggagcataacaggcttattatgggcaaggctgatgaagtatacagtgac
agccttgtggcaggagatgtgaactttattccgtttgacacactcacagagcctataacc
tgcactgctcagacacgttatcatcaaaaggacgctgaatgtacagtttcaccaatgaat
gatggcaaggtactcgtgacttttaaagaacctcataaagctatctcaaagggacaggca
gtggttttctatgacggtgaatacgttatcggaggcggaactatattataa
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