Ruminococcus bicirculans (ex Wegman et al. 2014): RBI_I01274
Help
Entry
RBI_I01274 CDS
T03158
Symbol
rumA1
Name
(GenBank) 23S rRNA (uracil-5-)-methyltransferase RumA
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
rus
Ruminococcus bicirculans (ex Wegman et al. 2014)
Brite
KEGG Orthology (KO) [BR:
rus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rus03009
]
RBI_I01274 (rumA1)
Enzymes [BR:
rus01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
RBI_I01274 (rumA1)
Ribosome biogenesis [BR:
rus03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
RBI_I01274 (rumA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
MTS
Cons_hypoth95
Methyltransf_15
PrmA
Methyltransf_4
PCMT
Methyltransf_11
Ubie_methyltran
N6_N4_Mtase
UPF0020
CDC24_OB1
Motif
Other DBs
NCBI-ProteinID:
CCO04986
LinkDB
All DBs
Position
I:1421377..1423047
Genome browser
AA seq
556 aa
AA seq
DB search
MLKKNEIIRLEISGMTNEGNGVGKHEGIAVFVPFTVIGDVIECRIVKVCKTYCYGITENI
VSGSVERTKNDCPVYSRCGGCCFRHMSYEEECRVKEQFIKDSFERIGKLYPEYDSFEGCK
QLVGYRNKAQYPVAEQDGRAVCGFYSRRSHHVCDYTDCALQPAIFKAVADDIMAYVNKRK
IKAYNEETGSGLLRHIYLRRGEHSGEIMVCLVITDLKKRGVFDVLVGELCKKYADIKSIV
FNENNRKTNCILGQKLVTAYGSNTIHDTMCGNDIEISPLSFYQVNTIQAERLYENAADYA
QLTGKETLLDLYCGAGTIGLSMSKKVKKLIGVEIIESAIDNAKRNAAANNVTNAEFICGD
AGKIAEILYSRGERPDVIIADPARKGCTRDALEYMAKMSPDRIVMISCNHATAARDCAVL
EELGYKTVKVKGVDLFGRTGHVETVVLLSHKKPDGHINVKVEFGEGEGKVPLDNIAKRAE
EYKPKERVTYKMIKEYIEAKYGFKVHTAYIAEVKRDLGLPMYDAPNAVEELKQPRKHPTA
EKVEAIKDALKHFEVI
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgctaaagaaaaatgagattatcaggcttgaaataagcggtatgacaaatgagggcaac
ggagtaggaaagcacgagggcattgctgttttcgtgccttttactgttattggcgacgtt
attgaatgcaggatagtcaaggtctgcaaaacgtattgctatggcattaccgaaaatatt
gtaagtggttcggttgaaagaacgaagaacgattgccctgtgtattcaaggtgtggcggt
tgttgttttcgtcacatgagctatgaggaagaatgccgtgtaaaagagcagttcataaag
gattcatttgagcgtattggtaagctttatcctgaatatgacagctttgagggttgtaaa
cagcttgttggctatcgcaataaggcgcagtaccctgtagcagagcaggacggcagggca
gtttgcggattctattcaaggcgttctcatcatgtatgcgattacactgattgtgcgtta
cagcctgctatatttaaagctgtcgctgatgacataatggcatatgtgaacaagcgtaag
ataaaggcatacaacgaggaaacgggaagcggtctgctcaggcatatttatctcaggcgt
ggcgaacactcaggtgagataatggtctgtcttgttattaccgaccttaaaaagcgtggc
gtatttgatgtgcttgtgggtgagctttgcaaaaaatatgctgatataaagagtatagtt
ttcaatgagaataaccgaaagaccaactgtatactcggacagaagcttgttactgcgtat
ggaagcaacacgatacacgataccatgtgtggaaatgatatagagatatcaccgctgtca
ttttatcaggtaaatacaattcaggcggagcggctttatgaaaatgccgcagattatgct
cagctgacaggaaaggaaactcttcttgatctttactgcggtgcaggaacgatcggtttg
tcaatgagcaaaaaggtgaaaaagctcataggtgttgagataatagagtctgcgatagac
aatgcaaaacgaaatgccgcagcaaacaatgtcacaaatgcggaatttatatgtggtgac
gcaggaaagatagcagagatactttacagccgtggcgaacgaccagatgtgataatagct
gaccctgcaagaaagggctgcactagggacgcactggagtacatggcaaaaatgtcccct
gacaggatagttatgatatcctgcaatcacgctactgctgctagggactgtgctgtgctg
gaagagttggggtataagacggtcaaggtcaagggcgtggatctgtttgggagaacgggg
catgtggagacggttgtactgctttcccacaaaaagccagacggacatatcaacgtaaaa
gttgagtttggcgaaggtgagggaaaagttccgcttgataatatcgctaaaagagccgaa
gagtacaagcccaaggaacgagtgacctacaaaatgataaaggagtacatagaagctaaa
tacggcttcaaagtacataccgcatatatcgcagaggtaaagagagatttaggattgccg
atgtatgatgctcctaatgcggtagaagaattgaaacagccgaggaagcatccgacagcg
gagaaagtggaagcgataaaggatgcgttgaagcattttgaagtgatttaa
DBGET
integrated database retrieval system
