Ruminococcus bicirculans (ex Wegman et al. 2014): RBI_I01353
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Entry
RBI_I01353 CDS
T03158
Symbol
addB
Name
(GenBank) ATP-dependent nuclease subunit B
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
rus
Ruminococcus bicirculans (ex Wegman et al. 2014)
Brite
KEGG Orthology (KO) [BR:
rus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rus03400
]
RBI_I01353 (addB)
Enzymes [BR:
rus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RBI_I01353 (addB)
DNA repair and recombination proteins [BR:
rus03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
RBI_I01353 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
CCO05065
LinkDB
All DBs
Position
I:1509154..1512510
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AA seq
1118 aa
AA seq
DB search
MVTVISGGSHSGRDKVFIDKIKSAVKNGEQVMVIIPDQFSFEYDKKLYEHLGAADFNVIQ
TAGFNRIAEFTEKLYGGRAKENADDNVRTILMYKAVRRLKQTKDIRFYKKSLEKGSFLAE
LNELVSQFRESGITPQDLALAAEKQSGSLAMKLFDISRLYDFYMDELEKAGMQDTLSAMA
RSVDQVKKNGYFRGMTVFVDAFNDFSFDELKMLDACIAQCKSITFSLCIDNESIRRYANH
PFADTLKTLQQITDISADHNYKVNTVECRNSSFRVPELEYVSKEIYNTCKKPYVGKCENV
SVISATDIYEESEFVSGKIWELVREKGYKFSDIALLARNLKDCASVFEGTFDRYEIPYFS
DCSDSVSSSSLVRYMNSLFKCLLSRKYSTDNILKYIKSPLFPMLNIEISNLEDYCIRWSV
EGDMWLSDFTVAGDLSEKQLEKINCSRRKIIEPFEAFKSKLVKDVTAGELCRGLYDLLGS
IELSQQTFSVVKKAGTSDNGTQLEMARGLKQLWNSVLSAIKSVYDCMNDEVISLRQFYEL
FKLMLSQMSVSRPPQKLDCVRICDPSHSRLEGVKAVFLVEVNDGIFPASLSSGGLITENE
KMILEGSDIHISHSARKSFQTEKLVCYNAFTLADEKLYVLYSESDLVGEAHHPSALVSEL
NGMFGKINTKAQDMGLDFYCTSFRTAYYKYMEHSRDKNATISAIRSALGLSQEYAEKLMR
TKNLHENGDYKLEEKTAEKLFMSEQPAKVSPTQLDTYYKCPFNYFCKYGLGLKTVRKADI
DGLNRGLIIHQLLEKIMRKDDDGTGFDKAFLTLSDDEIKEYIHKNVTEYIKESLGGMFGK
SPSFVFLQERMESNILHIIRFMQNELLHSKFRPALLEYKIDKSEGEDRLIIDVNGRDKII
LTGIIDRVDVFEDENGEKYVRIIDYKTGSIDLKYSMLYNGLNLQMFVYLTALLETKNPVN
IDGGLKQAGIVYYTLGNKPKTYEQTADADVEEAESRSRLNAFKPIGKVVDIKAVTEAFSS
EENYAYAPFKYSKTNGISGTIPDGFFTKLREFAIGKVAQFGEQLCQGNIQARPVAEACKH
CDFHDICGRINQEDVTDVKDSVYEEKLMEELTDRKEKK
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atggtaacagttataagcggtggctctcacagtggacgtgacaaagttttcatagataag
atcaagtctgctgtaaaaaacggcgagcaggtcatggtcataataccagatcagttttct
tttgaatatgataaaaaactgtatgaacaccttggtgcggcagatttcaacgtcatacag
actgcaggctttaaccgtatcgctgagttcacagagaagctttatggcggtagggcaaaa
gaaaatgccgatgataacgtccgcactatccttatgtataaggctgtcagacgtcttaag
cagaccaaggatatccgcttttataaaaagagtcttgaaaagggcagtttcttagccgaa
cttaacgaacttgtgagccagtttcgtgaaagcggaataacaccacaggatctagctctt
gccgctgagaagcagagcggctctcttgccatgaaactttttgatatctcaaggctttat
gatttttacatggatgagcttgaaaaagcaggaatgcaggatacactgtctgcaatggca
agaagtgtggatcaggtgaagaaaaatggatatttccgtggaatgacagtttttgttgac
gctttcaacgatttttcctttgacgagcttaaaatgctcgacgcttgtatcgcacagtgc
aagagtataacgttttctctatgtatcgacaatgaaagcattagaagatatgcaaatcac
ccttttgctgatactcttaaaacgttgcaacagataacagatatttccgctgatcataat
tacaaggtcaacacggtagagtgtcgtaacagctcatttagagtccctgaacttgaatat
gtgagcaaagagatttacaacacctgcaaaaagccatacgtcggaaagtgcgaaaatgtt
tctgttatatcagcaacggatatttacgaagaaagtgaatttgtcagtggaaagatatgg
gagcttgtcagagaaaaaggctataaattcagtgacatagctttgcttgcaagaaacctt
aaagattgtgcttccgtttttgagggtacgtttgacagatatgagataccatatttttca
gactgcagtgacagtgtttcttcatcatctctggtgaggtatatgaactcgcttttcaag
tgcttgctttcaagaaagtattccacggacaatattttgaaatacataaaatcgccactt
tttccaatgctgaatatcgagatatcaaatctggaagactattgcatacgctggagcgtt
gagggtgatatgtggctcagtgattttactgttgcaggtgatcttagcgaaaaacagctt
gaaaaaataaattgctcaagacgaaagataatcgagccttttgaagcatttaaaagcaaa
cttgttaaagacgttacagcaggggaactgtgccgtggactttatgatcttcttggcagc
attgagctttctcagcagaccttttctgtagtaaaaaaggcaggaacttcggataacgga
actcagcttgaaatggctagaggattgaaacaactttggaactctgttctttcggctatc
aaatccgtctatgactgcatgaatgacgaagttatctccctcagacagttttatgagctt
ttcaagctcatgctttcgcaaatgagtgtttcacgtcctccgcagaaacttgactgcgta
agaatatgcgacccgagccattcaaggcttgagggcgtaaaggctgtctttcttgttgag
gtgaacgacggcatatttcctgcgtctttaagctctggtggacttatcacagaaaatgaa
aaaatgatattagagggaagcgatattcatatctcacacagcgcaagaaaatcttttcag
acagagaaacttgtgtgctacaacgcttttacccttgcagacgaaaagctctatgtgctt
tattcagaatctgaccttgtaggagaagctcatcacccctctgcacttgtttccgagctt
aacggaatgttcggcaaaatcaataccaaagctcaggatatggggcttgatttttactgc
acttcttttaggacagcttactataaatatatggaacattcccgcgataaaaacgctaca
atttctgcaattaggtctgcgttggggttatcgcaggaatatgccgagaaacttatgcga
acaaagaatcttcatgaaaacggtgactataagcttgaagaaaagaccgcagaaaaactt
ttcatgtcagaacagcctgcaaaggtctcgcctactcagcttgatacatattataaatgc
ccgttcaattatttctgcaagtatggtcttggtcttaaaactgtcagaaaggcagatatc
gacgggcttaacaggggacttatcattcatcagcttcttgaaaagataatgcgtaaagat
gatgacggcacaggctttgacaaggctttccttactctctcagatgatgagataaaagag
tatatccacaaaaacgttaccgaatatataaaggaaagccttggtggaatgttcggaaaa
tctccgtcatttgtatttttacaggagcgtatggaaagcaatatcctgcatatcattcgt
tttatgcagaatgagcttcttcactcaaaattcagacctgcgcttttggaatacaaaata
gacaagtccgaaggagaagacagacttatcatagacgtaaacggcagagataagataatc
cttacgggaattatcgacagagttgacgttttcgaggacgagaacggtgaaaaatatgtg
agaataatcgactataaaacaggctctattgaccttaaatattcaatgctctacaatggc
cttaatttgcagatgttcgtgtatcttaccgctttacttgaaaccaaaaatccagtgaat
atagacggtggattgaagcaggctggtatcgtatactacacgctaggaaacaagcctaaa
acatacgagcagacagccgacgctgacgtagaagaagccgagagcagatcacggctaaac
gctttcaagcctataggaaaagtcgtggatataaaggctgtcactgaagctttcagctca
gaagaaaattacgcctatgcgccttttaaatattctaaaaccaacggcatttcaggcact
attccagacggcttttttacaaagctcagagaatttgctataggcaaagtggcgcaattt
ggtgaacagctttgccagggaaacattcaggcaagacctgtggcggaagcctgcaagcac
tgtgattttcacgatatctgcggcaggataaaccaagaggacgttacagacgtgaaagac
agcgtttatgaagaaaaacttatggaagaactaactgacagaaaggagaaaaaataa
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