Ruminococcus bicirculans (ex Wegman et al. 2014): RBI_I01360
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Entry
RBI_I01360 CDS
T03158
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rus
Ruminococcus bicirculans (ex Wegman et al. 2014)
Brite
KEGG Orthology (KO) [BR:
rus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rus03032
]
RBI_I01360 (topA)
03400 DNA repair and recombination proteins [BR:
rus03400
]
RBI_I01360 (topA)
Enzymes [BR:
rus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RBI_I01360 (topA)
DNA replication proteins [BR:
rus03032
]
Prokaryotic type
DNA Topoisomerases
RBI_I01360 (topA)
DNA repair and recombination proteins [BR:
rus03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RBI_I01360 (topA)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Auto_anti-p27
EzrA
DZR
Motif
Other DBs
NCBI-ProteinID:
CCO05072
UniProt:
A0AAW5KIR6
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All DBs
Position
I:1519800..1521890
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AA seq
696 aa
AA seq
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MSNLIIVESPTKIKTIKRYLSDDYEVVASKGHVRDLPKSKLGVDIDNNFEPKYVNIKDKE
GVIKDIKKLAKKSDHVYLAGDPDREGEAISWHLALLLGLDLNDKNRVTFNELTETGIKAG
MSHPRSIDINLVNAQQARRILDRLVGYKLSPFLWRKIRKGLSAGRVQSVAVKMICDRENE
IRAFVSQEYWSIDGKFSANGERKTFAAKLNTVDGEKPELKNKEQADEILKRLEGAEFVID
KVKKSVHRKSPAAPFTTSTLQQEASRRLSFQARRTMKTAQELYEGVEINDMGQTGLITYM
RTDSLRISDEARAAAYDFIRKKYGDKYIPDTPKKYKTKGNAQDAHEAIRPTHPEVTPDMV
KASGVTSDQYKLYKLIWERFIASQMSNCLMDTVSVDISANGCNFKATGYSVKFDGFTVLY
EEAKDDEGEKKNVLPPIKSGDSIKVRNLEENQHFTQPPARYTEATLVKAFEETGIGRPST
YVPTITTIINRNYVERDGKQLKPTSLGEVTNQLMSEHFDKIVDVKFTANMEKSLDEVENG
KKSWVKTLQDFYSDFDEELTEAEEAMDGKRIKVPDEETDQVCELCGKPMVIKIGRYGKFM
ACSGFPECKNTKKIVQETGGICPYCGKKVLLKKSKKGKKYYGCEDNPECKFMTWDVPTEE
KCPKCGSTLFQKGGKNGILICHKPDCGYERNLSNGG
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
ttgtctaatttgatcatagttgagtcaccaacgaagataaaaacaattaagcgttatctt
agcgatgattatgaagtcgtggcttcaaagggtcatgtccgtgacctgccaaaatcaaag
ctgggcgtcgatatagataataattttgaacctaaatatgtcaacataaaagacaaagag
ggcgttataaaagatataaaaaaacttgcaaagaaaagcgaccatgtttatcttgcagga
gaccctgaccgagagggagaagccatttcatggcatcttgcattgcttttgggtcttgac
ctgaatgataaaaaccgagtaactttcaacgaacttactgaaactggtatcaaagctgga
atgagccacccacgttctattgatataaaccttgttaatgcacagcaggcaagacgtatc
cttgacagacttgtgggctataagctttcaccttttctttggagaaagataagaaaagga
ctttcagcgggcagagttcagtctgtcgcagttaaaatgatatgcgacagagaaaacgag
ataagggcatttgtatctcaggaatattggtccattgacggaaaattttctgcaaacggt
gaaagaaagacctttgccgcaaagcttaatacagttgacggagaaaagccagagttgaaa
aataaagagcaggctgacgagatactgaaaagacttgagggtgccgagtttgttatcgac
aaggtaaaaaagagcgttcacagaaaatctcctgccgcaccattcaccacctcgacttta
cagcaggaagcgtcaagacgtctcagctttcaggcgagaagaacgatgaaaaccgctcag
gagctttatgagggtgttgagataaacgatatgggtcagacaggtcttatcacctatatg
cgtaccgacagccttagaatttctgatgaagcaagagcagcggcatatgattttatcaga
aaaaaatatggcgataagtatatccctgacacaccgaaaaaatataaaactaagggcaac
gctcaggacgctcacgaagccatccgaccaacacacccagaggtaacacctgatatggta
aaggcaagcggagtgacgagtgaccagtacaagctttataaactcatttgggagagattt
atagcttctcagatgtcaaactgccttatggacactgtttctgttgatatctctgcaaac
ggttgtaacttcaaggcaacaggctattctgtaaagttcgacggatttactgttctttat
gaagaggctaaagacgatgagggcgaaaagaaaaacgtgcttcctccaataaaatccggt
gactcaataaaggtgcgtaaccttgaggaaaatcagcatttcactcagccacctgcaaga
tacacagaagcgaccctcgtaaaggcgtttgaggaaacaggcatcggcagaccttcgact
tatgttccaactattacaaccataataaacaggaattatgttgagcgtgacggaaaacag
cttaagccgacttcgcttggcgaagtaacaaaccagcttatgagcgagcactttgataaa
atagttgatgttaagtttactgcaaacatggagaaatctcttgacgaagtggaaaatggc
aagaaaagttgggtaaaaactttgcaggatttttatagtgattttgacgaggaattgact
gaagccgaggaagccatggacgggaagcgtatcaaagtgcctgacgaagaaacagatcag
gtgtgcgagctttgcggcaaacctatggtaataaagataggcagatatggcaaatttatg
gcttgctcaggttttcctgagtgcaagaataccaagaaaatagttcaagaaacaggcgga
atttgcccttactgcggaaagaaagtgcttctcaaaaagtctaaaaagggcaaaaagtat
tacggctgtgaggacaatcctgagtgcaagttcatgacatgggacgttcctaccgaagag
aaatgccctaagtgtggcagtacgcttttccagaaaggcggaaagaacggaatactcatt
tgccataagcctgattgcggatatgaaaggaatttatctaatggcggttaa
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