Ruminococcus bicirculans (ex Wegman et al. 2014): RBI_II00041
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Entry
RBI_II00041 CDS
T03158
Symbol
polC
Name
(GenBank) DNA polymerase III PolC, alpha subunit
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
rus
Ruminococcus bicirculans (ex Wegman et al. 2014)
Pathway
rus03030
DNA replication
rus03430
Mismatch repair
rus03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RBI_II00041 (polC)
03430 Mismatch repair
RBI_II00041 (polC)
03440 Homologous recombination
RBI_II00041 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rus03032
]
RBI_II00041 (polC)
03400 DNA repair and recombination proteins [BR:
rus03400
]
RBI_II00041 (polC)
Enzymes [BR:
rus01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RBI_II00041 (polC)
DNA replication proteins [BR:
rus03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RBI_II00041 (polC)
DNA repair and recombination proteins [BR:
rus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RBI_II00041 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
HHH_6
RNase_H_2
S10_plectin
YhfH
HHH_3
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
CCO05815
LinkDB
All DBs
Position
II:43063..47541
Genome browser
AA seq
1492 aa
AA seq
DB search
MNTYTIESFFENYKELIPSVIEKGRILRLGYNEENGTFTCQAAFDKLVPFDSTVEFEMKM
RAALGAGKFILQLKYTPDMLCAEYFPELCKFLKSRFPLVNGFFDNAEAVYENGIFTVDIK
HGGEALLKKAGIETAFPALTMELFSVRADIRLTGVLETDMEEHQREQEEFLNSLPVPKID
PAQPEKKAAVTTNTASGASVDFRTANVDFTRFSLLCDDALVLMGAPISGNEQVMQMKDIP
ADYRGRVVVWGDIFGPVETKETKSGMLIAHLNFTDYTSSNSIKFIGSNKNFRNMKGLKRA
VLEAMLEHLKAGKTILVAGEIEEDDFDHSINIKPDSIMVVKREKEKDTCEHKRVELHCHT
NMSMMDALTPAGKLVERAYSWGHKALAITDHGVVQGYPDAGNTCIGIRKGGGDFKVLYGI
ESYEVNNDEKIFRGTDKRELTDEIICFDLETTGTNPNEDRIIEIGAVKLRDLEVVDKLDI
FVNPERPIPEFISNLTHITDDMVKDGASEREALLKFKEFIGDDPVLVAHNSQFDTGFISA
CAKRQGIEIKYSSIDTVPMSQIMLPELEKHKLNYVAEHFGLGDFQHHRGCDDAEVLAGIF
IRLSKMLMEQYPLILITVDMLNSLLANENQVLAKPTYHQIIIVRNNTGLKNLYRLISDSN
LKYFKRRPRIPKSELVRHREGLILGSACERGEVIQAYLEGRNYDEIKQIASFYDYLEIQP
DGNNKFMLTTEKPPYDRIHTAEDIKDINRFIVKLGEDLGIPVCATGDVHFMDKTDAQFRS
VIQASMGFPDADTQPPLYLKTTNQMLDELSYLGEEKAFEVVVTNTNNVADMVDPDLKAFP
NGTYTPFIEGSVYQLQYICWKKCCSIYGDCDPETIEVPEGEDVDVSKYFEGHIPDLVFKR
LKRELDSIIKHGFAVLYMISQKLVANSNENGYQVGSRGSVGSSFVASMSGISEVNPLVPH
YVCLNCHHSEFITDGSVGSGFDLPPKNCPVCGENMHRDGHDIPFETFLGFDGDKAPDIDL
NFSGDYQAKAHKYTEVLFGEDHVFKAGTIGMIQEKTAFGYVMKYLDERGKTVPKAEIERL
KLGCCGIKRTTSQHPGGMVVIPSDYEVYDFTPVQHPAEKVDSDMVTTHFDFHSLHDTILK
LDELGHDNPTMYKYLEMFTGRDILDCPMSDPAVYSLFTSPESLGVTEEDIMCQTGTLGIP
EMGTPFVRQMLLDCQPKNFSDLLQISGLSHGTDVWLGNAQELIKNGTCDISNVIGTRDSI
MTYLLYHGVEPKLSFKIMEITRKGKAPKLLTEEMKENMRQHDVPEWYIDSCLKIKYMFPK
AHAAAYVTAAIRLCWFKVHEPLAFYATYFTVKGEDFDAEIALKGKYIVRSKIEEIKNKPK
DEVSGKDSGVLEILMLVNEMLSRGYDFLPVNIKKSHATIYQIEDGKIRLPFCSLNGVGES
AAISIYEKAQNGEFISIEEFQQQSGVSKSVIETLEKNGAFGDMPKSNQISLF
NT seq
4479 nt
NT seq
+upstream
nt +downstream
nt
atgaatacatacaccattgaaagcttctttgagaactataaggagcttataccctctgtg
atagaaaagggcaggatattaaggctgggctataacgaagaaaacggcacttttacctgt
caggcggcttttgacaagctggtgccttttgacagcacagtggaatttgaaatgaaaatg
agggcggctctaggagcaggaaagtttattttgcagctcaaatatacccctgatatgctt
tgtgcggagtattttcctgagctttgcaagtttcttaaaagcagatttcctcttgtgaac
ggcttttttgacaacgctgaggctgtttatgaaaacggcattttcaccgtggatataaaa
cacggaggcgaagcgttgctgaaaaaggcgggcatagaaacggcttttcctgcgctcacc
atggagcttttttccgtaagggcggatataaggctcacaggtgtgcttgaaactgatatg
gaagagcatcagcgtgagcaggaggagtttttgaactccctccctgtgccgaaaatagac
cctgcacagcctgagaaaaaggcggctgttaccactaatactgcaagcggtgcttctgtg
gatttccgaactgcaaatgtggacttcacaaggttctcgcttctgtgtgatgacgctctt
gtgcttatgggcgcgccaatatcaggaaacgagcaggtgatgcagatgaaagatatccct
gcggattaccgtggacgtgtggtggtctggggcgatattttcggacctgtggaaacaaag
gaaacaaagtcgggtatgcttatagcacacctgaattttaccgactatacttcctcaaac
tctataaagttcataggctcaaacaagaatttcagaaacatgaaaggcttgaaaagggca
gtgcttgaggcaatgcttgaacaccttaaggcaggcaagaccatacttgtggcaggtgag
atagaggaggacgattttgaccactctataaacatcaagcctgacagcattatggtcgta
aagcgtgaaaaggaaaaggatacctgcgagcataagcgtgtggagcttcattgccatacc
aatatgtctatgatggacgctctcactcctgcgggcaagcttgtggaaagagcctattca
tggggacacaaagcacttgccataacagaccacggtgtcgttcagggctatcctgacgcc
ggaaatacctgtatcggcatacgcaagggtggcggtgacttcaaggtgctttacggcata
gagtcatacgaggtcaataatgacgaaaagatattccgtggaacggacaagcgtgagctt
acagacgagataatctgctttgaccttgaaactacgggtacaaatcctaatgaagatagg
atcatcgagataggcgctgtcaagctgagagatcttgaagttgtggacaagctcgatatt
ttcgtaaaccctgaaagacctatccctgagtttatctcaaacctcacccacatcactgac
gatatggtaaaggacggtgcaagcgaaagggaagctctccttaaattcaaggagtttata
ggtgacgaccctgttcttgtggcgcacaattctcagttcgatacgggctttatatccgcc
tgcgcaaaaagacagggcatcgagataaaatattcttctatagacaccgtgccaatgtcg
cagataatgcttccggagcttgaaaagcataaactcaactatgtggcggagcatttcgga
cttggggattttcagcaccaccgtggctgtgatgacgcagaggtgcttgcagggatattc
ataaggctgtcgaaaatgctcatggagcagtatcctctgattcttataacagtggatatg
ctcaacagtttgcttgcaaatgaaaatcaggtgcttgcaaagccgacttatcaccaaatt
attatcgtaagaaataacacgggtctgaaaaatctgtataggcttatatcagactccaat
cttaaatatttcaaaagacgtccgagaataccaaaatctgagcttgtaagacaccgtgag
ggtcttatcctcggtagtgcctgcgagcgtggcgaggtcattcaggcttatctcgagggc
agaaactatgatgagatcaagcagatagcaagcttttatgactatctggagatacagcct
gacggaaacaacaaatttatgctcaccaccgaaaagcctccttatgacaggatacacaca
gcggaggatataaaggatataaaccgctttattgtaaaacttggtgaggacttgggcata
cccgtctgcgcaacaggcgacgtgcatttcatggacaagaccgacgcacagttcaggtcg
gtgatacaggcttcaatgggcttccctgacgccgatactcagcctcctttgtatcttaag
accacaaaccaaatgcttgacgagctgagctatcttggcgaggaaaaggcgtttgaggtc
gttgtaacgaatacaaacaacgtggctgatatggtagaccctgacctgaaagcgtttccg
aacggtacttatacgccttttatcgaaggctcggtttatcagcttcagtatatatgctgg
aagaaatgctgttccatttacggcgactgtgaccctgaaactatagaagttccggagggc
gaggacgttgacgtatcaaaatattttgagggacacattccagaccttgttttcaaaaga
cttaaaagagagcttgactctattatcaagcacggatttgcagttctttacatgatatct
cagaagcttgttgccaactccaacgagaatggctatcaggtaggttcaagaggctcggta
ggttcgtccttcgttgcctccatgtcaggtatctctgaggtaaaccctcttgtgccacac
tatgtctgtcttaactgccaccacagcgagttcattacagacggctcggtaggctcaggc
tttgacctgccgccgaaaaactgtcctgtgtgcggagagaatatgcaccgtgacggacac
gatatcccatttgaaacgttccttggctttgacggcgataaagcccctgatatcgacctt
aacttctcaggtgactatcaggcaaaggcgcataaatatacggaagttcttttcggtgag
gaccatgtgttcaaagccggtactatcggcatgatacaggaaaagacagctttcggatat
gttatgaaatatcttgacgagcgtggaaaaacagtgccaaaggctgagatagaaagactt
aaacttggctgctgcggcataaagagaacgacctctcagcacccgggtggaatggtcgtt
atccctagcgactatgaggtctatgacttcacacctgttcagcaccctgcggaaaaagtg
gactctgacatggtaactacccacttcgacttccattctctccacgatactatcctgaag
cttgatgagcttggtcacgataacccgacaatgtataagtatctggaaatgttcacagga
cgagatatcctcgattgccccatgtctgaccctgcggtctattcgctgttcacttcccct
gagtcacttggagtgacggaggaggatataatgtgtcagacgggaacgctcggtatacct
gaaatgggtacgccgttcgtaagacaaatgcttcttgactgtcagccgaaaaacttctct
gaccttttgcagatatcaggactttcacacggcactgacgtatggctcggcaacgcacag
gagcttatcaaaaacggaacctgcgatatctcaaatgttatcggtactcgtgacagtatc
atgacatatctgctttatcatggcgttgagccaaagctgtcatttaagataatggagata
acccgtaagggaaaagctccgaaactgctcacagaggaaatgaaagagaatatgcgtcag
catgacgttccggagtggtatatcgacagttgtttgaagataaaatatatgttcccgaaa
gcccatgcggcggcttatgttacggcagctataagactttgttggttcaaggtgcatgag
ccgcttgcgttctatgcaacttattttacggtcaagggcgaggattttgacgcagagatc
gctctcaagggaaaatatatcgtcagaagcaagatagaagaaataaagaataaaccaaaa
gacgaggtgtcgggtaaggacagcggtgtgcttgaaattctcatgcttgtgaatgaaatg
ctcagccgtggatatgactttttgcctgtaaacatcaaaaaatctcacgcaactatctat
cagatagaggacggcaagataaggcttccgttctgttcacttaacggagtgggcgagtct
gcggcgataagcatttacgaaaaggcgcagaacggcgagtttatctctatcgaggagttc
caacagcagagcggagtgtccaaatctgttatcgaaactctggagaaaaacggagctttc
ggcgatatgcctaaatctaaccagatatcgttgttctga
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integrated database retrieval system
