Ruminococcus bicirculans (ex Wegman et al. 2014): RBI_II00184
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Entry
RBI_II00184 CDS
T03158
Symbol
holA
Name
(GenBank) DNA polymerase III, delta subunit
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
rus
Ruminococcus bicirculans (ex Wegman et al. 2014)
Pathway
rus03030
DNA replication
rus03430
Mismatch repair
rus03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RBI_II00184 (holA)
03430 Mismatch repair
RBI_II00184 (holA)
03440 Homologous recombination
RBI_II00184 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rus03032
]
RBI_II00184 (holA)
03400 DNA repair and recombination proteins [BR:
rus03400
]
RBI_II00184 (holA)
Enzymes [BR:
rus01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RBI_II00184 (holA)
DNA replication proteins [BR:
rus03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RBI_II00184 (holA)
DNA repair and recombination proteins [BR:
rus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RBI_II00184 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delta_C
CENP-S
Motif
Other DBs
NCBI-ProteinID:
CCO05958
UniProt:
A0AAW5KIZ9
LinkDB
All DBs
Position
II:203091..204149
Genome browser
AA seq
352 aa
AA seq
DB search
MALLTASALGKTIRENDIDSLYYFYGHDTAALESFTKRLVNKLCPADAQVMNFHKLDGKN
LDFPMLTDACEALPFMAERVVVTINDLNIDAVTKDDLDDLKKILGSLGETTTVIIYATGV
DLFKNKKYLTDKNKRFADFCEKHGTVCNFEYKRASDLGKSISTYLAKSGCTITKSNAEYL
ANLCLCDTAFISKELEKLSAYAEGREVTREDIDLLCIRRIESDGYSLAINILRGNAAMVF
TRLRELDVQNYEPYAIIGIIGFSLADIYRAKLARSSGRSVADVAKDFSYAKNREFAVKNA
YSECGNISAERIRKTLEILSETDLMLKTRSRGKDGDMLTLEQGLARSMALRC
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atggctttgcttacggcttcggctcttggtaaaacgataagagagaatgatatcgacagc
ctttattatttttacggacatgatacagcggcacttgaaagctttacaaaaaggcttgtg
aacaagctttgccctgctgacgctcaggtcatgaactttcataagcttgacggcaaaaat
cttgattttccaatgcttacagacgcttgcgaagctctgccttttatggctgaacgtgtg
gtggtgactataaacgaccttaatatagacgcagtgactaaggacgatctggacgacctg
aaaaagatcctgggctctcttggcgaaactaccacagtgataatctatgccacaggagtt
gaccttttcaagaacaaaaagtatcttacagacaaaaacaagcgctttgcagatttctgc
gaaaagcatggcactgtctgcaactttgaatacaaaagggcttccgaccttggaaagtct
atatccacctatcttgcaaaaagcggctgtaccataacaaaaagcaacgcagagtatctt
gcaaacctctgtttgtgcgacactgcatttatcagcaaggagcttgaaaagctttcggct
tatgcagagggcagggaggtaacaagagaggatatcgacttgctttgtatcaggcgtatc
gagtcggacggatattctcttgcaataaatatcctcagaggcaatgcggcaatggtcttc
acacgtttgcgtgaactcgatgtgcagaattatgaaccatatgctataataggaataatc
ggcttttcccttgcggatatctatagggcaaagcttgcacgttcctctggcaggagcgtt
gcagacgtggctaaagatttttcctatgcgaaaaatagagagtttgcagtaaaaaacgcc
tattccgagtgcggaaatatctcggcggagcgtataagaaaaacgcttgagatactttct
gaaactgaccttatgctcaaaacaaggtcacggggaaaagacggagatatgctcaccctc
gagcaggggcttgcaaggtcaatggcgttaaggtgttag
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