Ruminococcus bicirculans (ex Wegman et al. 2014): RBI_II00246
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Entry
RBI_II00246 CDS
T03158
Symbol
hip
Name
(GenBank) Integration host factor, beta subunit
KO
K03530
DNA-binding protein HU-beta
Organism
rus
Ruminococcus bicirculans (ex Wegman et al. 2014)
Brite
KEGG Orthology (KO) [BR:
rus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rus03032
]
RBI_II00246 (hip)
03036 Chromosome and associated proteins [BR:
rus03036
]
RBI_II00246 (hip)
03400 DNA repair and recombination proteins [BR:
rus03400
]
RBI_II00246 (hip)
DNA replication proteins [BR:
rus03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
RBI_II00246 (hip)
Chromosome and associated proteins [BR:
rus03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
RBI_II00246 (hip)
DNA repair and recombination proteins [BR:
rus03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
RBI_II00246 (hip)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
VWA_3
DUF7959
HU-DNA_bdg
HU-CCDC81_euk_1
Motif
Other DBs
NCBI-ProteinID:
CCO06020
UniProt:
A0ABM9QJ72
LinkDB
All DBs
Position
II:complement(291930..292205)
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AA seq
91 aa
AA seq
DB search
MTKAELINLIAEKGDYSKKDAEKALTTVIDSVSETLANGEKISLVGFGTFEVRERAEKTA
INPRTKEQITVAAKKVPAFKAGKALKDAVNK
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaggcagaactgatcaatcttatcgcagaaaagggcgattattcaaagaaggac
gctgagaaggcacttacaactgttattgattctgtatcagagacacttgctaacggcgag
aagatctcactggtaggtttcggtacattcgaggttagagagagagctgaaaagacagct
atcaatcctcgtacaaaggagcagatcactgttgcagctaagaaagttcctgcattcaag
gcaggcaaggctcttaaggacgctgtaaacaagtaa
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