Ruminococcus bicirculans (ex Wegman et al. 2014): RBI_II00389
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Entry
RBI_II00389 CDS
T03158
Symbol
rnr
Name
(GenBank) ribonuclease R (EC:
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rus
Ruminococcus bicirculans (ex Wegman et al. 2014)
Pathway
rus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBI_II00389 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rus03019
]
RBI_II00389 (rnr)
03016 Transfer RNA biogenesis [BR:
rus03016
]
RBI_II00389 (rnr)
Enzymes [BR:
rus01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RBI_II00389 (rnr)
Messenger RNA biogenesis [BR:
rus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RBI_II00389 (rnr)
Transfer RNA biogenesis [BR:
rus03016
]
Prokaryotic type
tRNA degradation factors
RBI_II00389 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
OB_RNB
CSD2
RNase_II_C_S1
OB_HELZ2
Gp18_dom_I
Motif
Other DBs
NCBI-ProteinID:
CCO06147
UniProt:
A0ABP1WLK3
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All DBs
Position
II:443608..445719
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AA seq
703 aa
AA seq
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MKLDYRKIIYSKLKKAGKKPLTFKELLRSCRGKGFEFEKFTKAVDKMKKNGEIIEDKFGI
RLVDPKKFVKCEVVRLNKTYGFVKNLDTDEEIFVVGKYLKGAMPHDIVLVRTFKGEGACT
EGEVMSIVEENFAKFTGELVSEFGVLKIVPDMLSKYAMTFENPMRLELHEGDKVVAQVTK
RGNRHSEHVCEIVSSYGSSMKASACAMSVLEVNGLTPVFPSEVIFEARKVSDYSRIKEEI
PNRLDLRDKPIFTIDGADTKDIDDAISVERTKTGYLLGVHIADVSHYVQPKSQLDNEAFK
RGTSVYYANRVIPMLPKELSNGICSLNPNEDRLAFSCLCELDKQGNITDYKFAKTVIRSR
VKGVYSEINSLLAGSDDAELKEKYAEVSDQLPIIKELADILYKNKKNRGCPELETSESKL
IINDEDICVGVERRTRGRSEEIIEDFMLVANECAARFGMDNNLPFVYRIHEEPSDEKLES
LREALVKLNVQYKLGEKACPGDMSEILKAAKGTDIDLIMNNIVLRSMSKARYSTEPVGHF
GLALEDYAHFTSPIRRYPDLTIHRIMSAFLSGSSAEECATKFNKFVYASADQSTKTELTA
MQVERSCEDCYKAEYMNAHIGEEFDGTVVSAVEFGLFIALPNTCEGLLHTDNMPDGEYVC
DDMVSLKNLTNGMEYRVGDPIRVKVINANVNSGKIDFALADED
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgaaactggattacagaaaaataatatactcaaagttaaaaaaagcaggcaaaaagcca
ctgactttcaaagaactgctgagatcatgcagaggaaagggctttgagtttgaaaagttc
acaaaagccgttgacaaaatgaagaaaaacggcgagataatagaagataaattcggcata
aggctcgttgaccctaagaaattcgtcaagtgcgaggtggtaaggctcaataagacctac
ggctttgtgaaaaatcttgacactgacgaggaaatttttgttgtgggcaagtacctcaaa
ggcgcaatgccacacgatatcgtccttgtgagaacgttcaagggcgagggagcttgcacc
gagggcgaggtcatgagcattgtggaggagaattttgctaagttcacaggggagcttgtg
agcgagttcggcgtgctgaaaatagtccctgatatgctgtcaaaatatgcaatgaccttt
gagaaccctatgcgtcttgagctacatgagggcgataaggtggtggcgcaggtcacaaag
cgtggaaacaggcactctgaacacgtctgcgagatagtttcaagctatggaagctccatg
aaagcctctgcctgtgcaatgagcgtacttgaggtcaatggtctgacccctgttttccca
agcgaggtcatctttgaggctaggaaagtgtctgattattcaaggataaaagaggagata
cctaaccgccttgacctccgtgacaagccgatattcaccattgacggcgcagatacaaag
gatatcgacgacgcaatttctgttgaacgaaccaaaacaggttatctccttggcgttcac
attgccgacgtttcccactatgttcagccaaagtcacaactggataacgaagctttcaaa
cgtggcacaagcgtctattacgcaaaccgtgttataccaatgctccctaaggagctttca
aacggcatctgctcccttaatccgaatgaggacagacttgcgttctcatgtctttgtgaa
cttgacaagcagggcaatatcacagactataagtttgcaaaaactgttatccgctcccgt
gtaaagggcgtttattccgagataaattcacttttggcaggcagtgacgatgctgaactt
aaagaaaagtatgccgaggtttcagatcagcttcctattataaaagagcttgcggatatt
ttgtataaaaacaagaaaaaccgtggctgtcctgagcttgaaacctctgagagcaagctt
atcatcaatgacgaggatatctgcgtgggcgttgagaggcgtacccgtggaagaagcgag
gagataatagaggacttcatgcttgttgcaaacgagtgtgccgcaagatttggcatggat
aataacctgccgttcgtttatcgtatccacgaagagccgtcagacgaaaagcttgaatct
ctgagagaagcgcttgtcaagctcaacgtccagtataagctgggcgaaaaggcttgccct
ggggatatgtcggagatactcaaagccgcaaagggtactgatatcgaccttatcatgaac
aatatcgttctgagaagtatgtcaaaggcaagatattccaccgaacctgtgggtcacttc
ggacttgcgctggaggattacgcacacttcacctcgcctatcagacgttaccctgacctg
actatccataggataatgtcagcttttctcagtggcagcagtgcagaggagtgcgccaca
aagttcaacaagttcgtttacgcctcagccgaccagtccacaaagacggagcttaccgca
atgcaggtggagcgaagctgtgaggattgctacaaggctgagtatatgaacgctcatatc
ggtgaggagtttgacggaactgtggtgtcagccgtcgagttcggacttttcatcgccttg
ccgaacacctgtgagggacttcttcacacggacaatatgcctgacggcgaatatgtctgc
gacgatatggtgagcctgaaaaaccttacaaacggcatggaatatcgtgtgggcgaccct
atcagagtaaaggtgataaacgcaaatgtaaattcgggcaagatagattttgcacttgct
gacgaggactaa
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