Ruminococcus bicirculans (ex Wegman et al. 2014): RBI_II00590
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Entry
RBI_II00590 CDS
T03158
Name
(GenBank) possible TraG family protein
Organism
rus
Ruminococcus bicirculans (ex Wegman et al. 2014)
Pathway
rus03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
rus00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
RBI_II00590
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Gene cluster
GFIT
Motif
Pfam:
T4SS-DNA_transf
TraG-D_C
TrwB_AAD_bind
Motif
Other DBs
NCBI-ProteinID:
CCO06344
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Position
II:complement(659613..661403)
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AA seq
596 aa
AA seq
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MIGSEKLNEKQMILIGVLAVIFVAFLVVVNLLDNKSLNGIKAKKVGNGQHGTARWATKAE
IKRTFIPLPFEPDKWRKGENLPQSSNGDVIQGTVVGCRGSGKKTVALVDTGDVHTLMIGA
AGVGKTAYFLYPNIELACASGMSFISTDTKGDVARNYGTIASKYYGYNVSVLDLRNPTRS
DENNILHLVNKYMDIYLSDKNNLSAKAKAEKYAKITAKTIINIGGGDSHSYGQNAFSYDA
AEGLLASVILLLAEFGEKNERHIVSVFKLIQDLLAKYQPDPKAKPKMYFSKLMDKLPSEH
KAKWLAGAALNASDQSMLSVMSTALSRLNSFLDSELEQMLCFGTAIDAEKFCNEKSAIFI
VLPEEDTSKYFMVSLLIQQLYREILVIADENGGKLKNRVMFYCDEFGTFPKIEGAESMFS
AGRSRKISIVAIIQSFAQLEQNYGKQGMEIITDNTQLTVFGGFAPNSQSAEVLSKALGEQ
TVLSGSVSNGRDRSQSLQMIGRPLMTVDELKSMPKGQFIVMKTGTHPMISKLKLFFKWGI
KFEEEYKLPDKTARAVSYKERDELIKDVEVKYPQKKKEITLEYEELTAKKKTTVKT
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgattggaagtgaaaaattgaatgaaaaacaaatgattttaataggcgtgcttgcagtg
atttttgttgcatttttagtagttgtaaatctgcttgacaacaagtcgcttaacggaatt
aaggcgaaaaaggtcggcaatggacagcacggaactgcgaggtgggcgacaaaagctgag
ataaaacgtacttttatccctctgccattcgagcctgataaatggcgtaagggagaaaat
cttccgcaaagctctaacggagatgttattcagggaactgtggtcgggtgcagaggttca
ggaaagaaaactgttgcacttgtggataccggtgatgtccatacgcttatgataggagcg
gcaggagtcggcaagaccgcatacttcttgtaccctaacatcgaactcgcttgtgcaagc
ggaatgtcgtttatctcgacggatacaaagggagatgtggcacgaaattatggtactatc
gcaagcaagtattacggctacaatgtttctgtgcttgatctgcgtaaccctacacgctca
gacgaaaacaatatcctgcatcttgtaaacaagtatatggacatttatctgtccgataaa
aacaatctttcagcgaaagcaaaggctgagaaatatgctaagatcacagcaaaaacaata
atcaacatcggcggcggtgacagccacagctacggacaaaacgctttttcctacgatgcg
gctgagggtctgcttgcttccgttattcttttacttgcggagttcggcgaaaagaacgaa
cgtcacatcgtttcggtgttcaagctgatacaggaccttttggcaaagtatcagccagac
ccgaaagcaaaacctaaaatgtatttttcaaagcttatggacaagcttccaagcgaacac
aaagccaaatggcttgcaggagcggctctgaatgcgtccgaccagtctatgctttctgta
atgtcgactgcactttcaaggctcaacagttttcttgattctgaacttgaacaaatgctg
tgttttggaacggcgatagacgccgagaagttctgcaatgaaaagtctgctatttttatt
gttcttcccgaagaagatacgagcaaatattttatggtttcacttttgatccaacagcta
taccgtgagatattagtcattgcagatgaaaacggcggaaagcttaaaaacagagttatg
ttctactgcgacgagtttggaacttttcctaagatagagggtgctgaatctatgttctcc
gcaggacgttcaagaaaaatatccattgtggcgataatacagtcctttgcacagcttgaa
cagaactacgggaaacagggtatggagataataactgacaacactcagcttactgtgttc
ggcggatttgcaccaaacagccagagtgcagaggtgctttcaaaagctttgggcgaacag
actgtattgagcggttcggtatcaaacggcagggacagatctcagtcattgcagatgata
ggcagaccgcttatgactgtggacgaactgaaatctatgccgaaaggacagtttattgtt
atgaaaacaggaacgcacccgatgataagcaagctaaaactgttcttcaaatggggtatc
aagtttgaagaagaatacaaacttcccgataagaccgcccgtgccgtttcatacaaagag
cgtgatgaactgataaaagacgttgaagtgaaatatccgcagaagaaaaaagagatcacg
ttagaatatgaggagctgacggcaaagaaaaagacaactgttaaaacgtaa
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