Ruegeria sp. THAF33: FIU92_05195
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Entry
FIU92_05195 CDS
T06269
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rut
Ruegeria sp. THAF33
Pathway
rut03410
Base excision repair
rut03430
Mismatch repair
rut03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FIU92_05195 (recJ)
03430 Mismatch repair
FIU92_05195 (recJ)
03440 Homologous recombination
FIU92_05195 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rut03400
]
FIU92_05195 (recJ)
DNA repair and recombination proteins [BR:
rut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
FIU92_05195 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
FIU92_05195 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FIU92_05195 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
QRPTase_C
Prok-RING_1
Motif
Other DBs
NCBI-ProteinID:
QFT72414
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Position
complement(1017435..1019198)
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AA seq
587 aa
AA seq
DB search
MVHKGQTMSFLGVEQSLTGRRWVGPEAELERAAEMMTQQTDLPRAVCQVLARRGVLVMEA
RGFLDPKLKELLPDPRDMKDMETAAARFLDAVRHRQKIAVFADYDVDGGCSAALVLVWLR
QMGLQATLYVPDRIDEGYGPNVPAMRELATSHDLIICVDCGTLSHEPIAAATGADVIVLD
HHLGGETLPDCVAVVNPNRQDESGDLGYFCAAGVVFLMLVEAGRQLRAAGAKGPDLISML
DLVALATVADVAPLIGANRALVRQGLKVMAQRQRPGLVALSDVSRMDTAPNSYHLGFLLG
PRVNAGGRIGQADLGARLLSTDSLHEAQALSERLDALNTERRDIENAVRAAAMEQAEGRG
LDAPLVWAAGEGWHPGVVGIVASRLKETANRPAIVIGFDGDEGKGSGRSVSGVDLGASIQ
RLAAEGLLVKGGGHKMAAGLTVKRDKLEPAMERLSELLAKQGAGQGGPADMKLEGALMPA
AATVDLVEQIEQAGPFGAGAPAPRYALPDLQVRFAKRVGETHLKLSLSDGMGGGLDAIAF
GAFDGPMGERLSNHGGARFHFAGRLEVNTWGGRQSVQLRLEDAAEAN
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
ttggttcacaaggggcagacaatgagttttcttggcgtagaacaatcactgaccgggcgg
cgctgggttggcccggaagccgagctggagcgggctgccgagatgatgactcaacagacc
gacctgccgcgtgcggtatgtcaggttctggcccgtcgtggcgtgctggtcatggaggcg
cgcggctttctggaccccaagctcaaggagctgctgccagatccccgtgacatgaaagac
atggaaacggcggcggcgcgttttctggacgccgtacgccatcgccagaaaatcgcggtg
ttcgcggattacgatgttgacggcggctgctctgccgcgctggtgctggtttggcttcga
cagatggggttgcaggcgacgctttatgtgccggatcggattgatgagggatatggtccg
aatgttccggcaatgcgggaactggcaaccagccacgacctgatcatttgcgtcgattgc
ggcacgctcagccatgaaccgattgccgcggccacgggggcggacgttattgttctggat
caccacctcggcggcgaaaccctgccggattgcgttgcagtcgtgaatcccaaccggcag
gatgaaagcggtgatctgggctatttctgcgcggcgggtgtcgtgtttctgatgctggtc
gaagcagggcgccagctccgcgcggcaggcgcaaagggacctgacctgatatcgatgctg
gacctggtggccctggcaaccgtggctgacgttgcgcctttgatcggcgccaatcgcgcc
ctggttcgacaaggccttaaagtgatggcccaaaggcagcgccccggacttgtcgcgctg
tccgatgtctcgcgcatggatacggcgcccaacagctatcacctgggttttctgcttggc
ccccgcgtgaacgcaggtggtcgcatcgggcaggccgatctgggcgcccgcctgctgagc
acggattccctgcacgaggcacaggccctgtccgaacgtctggacgcgctgaacacagaa
cgccgggacattgaaaacgccgtgcgcgccgccgcgatggagcaggccgagggtcgcggg
ctcgacgcgccgctggtctgggccgccggtgaaggctggcatccgggtgtggtgggcatc
gtggcgtctcgtttgaaggaaaccgccaaccgtccggccatcgtgatcggctttgacggt
gatgagggcaaaggctcggggcgttcggtctcgggcgtggatctgggggcgtcgatccag
cggctcgcggcggaagggttgctggtcaagggtggcggtcacaagatggccgctggactt
accgtcaagcgcgacaaactggaacctgcgatggaacgcctcagcgagttgctggcaaaa
caaggtgcaggtcagggcggccctgcggatatgaagctggaaggcgcccttatgccggct
gccgcgacagtggatcttgtcgaacagatcgaacaggccggaccgtttggcgccggagcc
cctgccccgcgatacgcgcttccggatcttcaggtgcgttttgccaaacgtgtcggggaa
acgcacctgaagttgtcattgtccgatggcatgggtggtgggctggatgcgattgccttt
ggtgcctttgacggtccgatgggcgagagactgtcaaatcatggtggcgcgcgctttcat
tttgcaggccggcttgaggtgaacacctggggcgggcgacaatccgtgcagctcaggctc
gaggacgcggcagaggcaaattga
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