Ruegeria sp. THAF33: FIU92_08325
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Entry
FIU92_08325 CDS
T06269
Symbol
rnd1
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
rut
Ruegeria sp. THAF33
Brite
KEGG Orthology (KO) [BR:
rut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rut03016
]
FIU92_08325 (rnd1)
Enzymes [BR:
rut01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
FIU92_08325 (rnd1)
Transfer RNA biogenesis [BR:
rut03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
FIU92_08325 (rnd1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
QFT73029
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All DBs
Position
complement(1640212..1641369)
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AA seq
385 aa
AA seq
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MKTLTTTQELADFCKAAEGYPYITVDTEFLRERTYYSKLCLVQLAVPSEDEDSAVLVDPL
ADGLSLDPLYDLFRNESVVKVFHAARQDLEIFWVEAGVFPKPLFDTQVAAMVCGFGEQVG
YETLVRKICKQGVDKTSRFTDWSRRPLTDAQKNYALADVTHLRGIYERLAAELEKTQRSH
WVAEELRTLTQPATYDIRPEDAWKRVKTRTNSAKFLAVVRELAQFRESYAQENNVPRNRV
FKDDALIELASTKPKTHSDLGGSRLLLREARKGAIAEGILAAVKRGVNCPPDKLPKVDTS
RDKLKVNPALADLLRVLLKSKTESSGVAAKLIATSSDLDQIAAGERDVPALSGWRFEVFG
EDALKLCEGKIALAAKGQSVKVVSL
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccctgacgacgacgcaagagctggccgatttctgcaaggccgccgaaggctat
ccctatatcacggtcgacaccgaatttctgcgcgagcggacgtattactccaagctgtgc
ttggtgcaattggctgtcccgtccgaggatgaagacagcgcggttctggtcgatccgctt
gccgatggtttgtcgcttgacccgctttacgatcttttccggaatgaaagcgtggtcaag
gtgttccatgccgcccgccaggaccttgagatcttctgggtcgaagccggcgtgtttccc
aagccgctgtttgacacacaggtcgcagcgatggtgtgtggctttggcgaacaggttggc
tatgaaactctggttcggaaaatctgcaagcagggcgtcgacaagacctctcggttcacc
gactggtcccggcgcccgctgaccgatgctcagaaaaactatgctcttgcagatgtgacc
catttgcgcgggatctacgagcgtctggccgcagaacttgaaaagacgcagcgcagccac
tgggttgccgaagaactgcggacgctgacacagcctgccacttatgacatccggcctgaa
gacgcatggaagcgggtaaagacgcgcacgaactcggccaagtttctggctgtggtgcgg
gaattggcgcagtttcgcgaatcctatgcgcaggaaaacaacgtgccccggaaccgcgta
ttcaaagacgacgcgctgatcgagctggcatcgaccaaacccaaaacacattcggatttg
ggcggatcccgcctgttgctgcgcgaagcccgcaaaggggcgatcgccgaaggtattctg
gcagcggtcaagcgtggcgtgaattgcccgcccgacaaattgcccaaggtcgacacttcg
cgcgacaagctcaaggtcaatccggcgctggctgacctgctgagggttctgctaaagtcc
aaaaccgaaagttcaggtgtggcggcgaaattgatcgccacaagttcggacctggatcag
attgcggccggcgagcgggatgttccagccttgtcgggatggcggttcgaagtctttggc
gaggatgctctcaagttgtgcgaaggaaagattgccctggcggccaaagggcagtcggtc
aaggtcgtgtccctgtaa
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