Ruegeria sp. THAF33: FIU92_16565
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Entry
FIU92_16565 CDS
T06269
Name
(GenBank) PD-(D/E)XK nuclease superfamily protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
rut
Ruegeria sp. THAF33
Brite
KEGG Orthology (KO) [BR:
rut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rut03400
]
FIU92_16565
Enzymes [BR:
rut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FIU92_16565
DNA repair and recombination proteins [BR:
rut03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
FIU92_16565
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
QFT74656
LinkDB
All DBs
Position
complement(3263631..3266555)
Genome browser
AA seq
974 aa
AA seq
DB search
MFESGTVPRVFAVPPGTDFPKALVDGLRQRCSGPPEALARVELILNTRRMERRVRDLFNQ
GPPCLLPRLSLVTDLGERVDLARIPPAIPPLRRRLELTQLVSKLLEQQPDLAARSSIFDL
SDSLAALIDEMQGEGVSPEAIRQLDVSDMSGHWSRAQAFIGIADQFIDTGGQTMDAQARQ
RRVVENLIARWQIAPPQHPVILAGSTGSRGTTLMLMEAIARLPQGALVLPGFDFDQPDHV
WQGLDDALTSEDHPQYRFRKLMRALELTPGQITQWTDLSAPSPSRNRLISLALRPAPVTD
AWMTEGPRLSEIKGATDGLTLVEAQSPRAEALAIALRLRQAAETGQTAALITPDRMLTRQ
VSAALDRWNIVPDDSAGLPLQLSPPGRFLRHVANLFTRRLEGEALLTLLKHPLCHDGGDR
GIHLLHTRDLELDLRRHGPPFPDSASLAAFAVRKEAQESWVKWVVQHFCDQQITSELHLA
DWVARLMTLAEAISAGSTGETGTLWDKNAGQKALGVLNSLSAEAQHGGLMTAHDFADLLG
ALLAGEEVRDRDAPHPHIMIWGTLEARVQGADLLILGGLNEGSWPEAPTPDPWLNRQMRD
KAGLLLPERRIGLSAHDFQQAIGAPEVWLTRATRSDDAETVPSRWLNRLTNLLQGLPGQG
GPEALVKMRAQGEKWLNWSEALEDAPRIDPAPRPSPRPPAAARPRRLSVTEIKRLIRDPY
AIYAKHVLRLKPLDPLVQAPDALLRGIVIHEILEHFIKDSVLDRALLARGNFLKRAHALL
DQHVAWPTARKLWLARLERIAEDFLGAELARRADGGPVAFEAAMKLVLNPLDFTIVGRAD
RIDCNSRGALRIIDYKTGAPPTESQQSKFDKQLLIEAAMAEQGGIEGLDPTGVAEAIFIG
MGGSYKEVAAPLEKEPTDKVLAELKELISAYLEPDQGFSSRRMLHKDSDIGDYDHLARFG
EWDRTAETCPEDLT
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaatccggcaccgtgccccgtgtatttgccgtgcctcccggtacggatttcccc
aaggcattggtcgatggcctgcggcagcgctgttcgggcccacccgaagctttggcgcgg
gtagagttgatcctgaacacacgacgcatggaacggcgcgtccgcgatctgttcaatcag
gggccaccttgccttctgccccgtctctcgttggtgacggacttgggtgaaagggttgat
ctggcgcggatcccgcctgctatcccgcctctgcggcggcgtcttgagttgactcagctt
gtatccaaactgctggaacaacagccggaccttgccgcccggtcatcgatctttgacctg
tccgacagtctggccgcgctgattgacgaaatgcagggcgaaggcgtatcgcccgaagcg
atccggcagctggacgtcagcgatatgtccggacactggtcgcgggcacaagcctttatc
ggcatcgcggatcaattcatcgacaccggcgggcagacgatggatgcacaggcccgccag
cgccgcgtggtcgaaaacctgatcgcgcgatggcagattgcccccccgcaacacccggtc
attctggcgggctctaccgggtcccgtggcaccaccctgatgttgatggaagccatcgcg
cgcctgccgcaaggcgcattggtgctgcccggatttgatttcgaccagccggatcacgtt
tggcaggggttggatgatgcgttgacgtctgaagatcacccacaataccgtttccgcaag
ttgatgcgcgcgctggaacttacaccgggtcagatcacccaatggacggatttatcggct
ccctcaccctcgcgtaaccgcttgatatccctagctttacgtccggcacccgtcactgac
gcctggatgaccgaaggccccagactgtccgaaataaaaggcgcaaccgacggcctgaca
ctggtcgaggctcaatcgcctcgcgccgaggcattggccatcgccctgcgcctgcggcag
gcggcggaaacaggacagaccgccgctctgatcacgccggatcgcatgttgacccgccag
gtcagcgccgcgctggatcggtggaacatcgtgccggacgacagtgcgggcctgccgctg
caactttccccaccgggacgttttctgcgccatgtggccaacctgttcacacgccgtctg
gaaggcgaggcgctgctgacccttttgaagcacccgctatgtcatgatggcggtgaccgc
ggaattcatttgctgcacacgcgtgacctggaacttgacctgcgccgtcacggcccgccc
tttcctgacagtgcaagccttgcggcttttgcagtgcgcaaagaggcccaggaaagctgg
gtgaaatgggtcgtgcagcatttctgcgaccagcagatcaccagtgaactgcacctcgcg
gactgggtggcgcgtttgatgacactggccgaggcgatctcggccggcagcacgggtgaa
acgggcactctgtgggacaaaaacgcaggccaaaaggcactgggggtgctgaattctctc
agcgcagaggcgcagcatggcggcctgatgacggcccatgactttgccgatctgctgggt
gctctgcttgcgggtgaagaggttcgtgaccgggatgcgccgcatccgcacatcatgatc
tggggcacgctcgaggcacgggtgcagggcgccgacctgctgatccttggcgggttgaat
gaaggaagttggccagaggcgccaacgcccgatccctggttgaaccggcagatgcgtgac
aaagccggcttgttgctgcccgaacgccggatcggcctgtctgcgcatgacttccagcag
gccatcggcgcacccgaagtgtggttgacccgcgcgacccgctcggatgatgccgagacg
gtaccgtcgcgctggctgaaccgactgaccaacctgttgcagggtttgccgggtcagggt
ggccccgaagctctggtcaaaatgcgcgctcagggcgaaaaatggttgaactggtccgag
gcactggaagatgcgccgcggatcgaccccgcaccgcgtccttctccgcgcccaccggcc
gccgcgcgtccgcgccgtctgtctgtgaccgagataaagaggctgatccgcgatccatac
gcgatttacgccaaacatgtgcttcggctgaaaccgctagatccgcttgtacaggccccc
gatgccttgctgagaggaattgtgattcacgaaatcctcgagcatttcatcaaggacagc
gtcctcgacagggctttgctggcgcggggcaatttcctgaaacgggcgcatgctctattg
gatcaacacgtcgcctggccgacggcccgcaaactgtggctggcccggttggaacggatc
gcggaggatttccttggcgcagaactcgcgcgccgggctgatggcgggccggtggcgttt
gaggcggcaatgaagctggtgctgaaccctctggatttcaccattgtcgggcgcgcggac
aggatcgattgcaacagccggggtgcgttgcggatcatcgactataaaaccggcgcgcca
cccacggaaagtcagcaatccaaattcgacaagcagttgctgatcgaagcggccatggcc
gagcagggcgggattgagggccttgacccgacaggcgtggccgaagccatcttcatcggt
atgggtggcagctacaaggaggttgccgcgcccttggaaaaagaaccgaccgacaaggtt
cttgccgagctgaaagagttgatttccgcttatttagagcctgatcagggattttcgtcc
cgtcgtatgctgcacaaggattcagatatcggtgattatgatcacctggctcggttcggc
gaatgggaccggacagccgaaacatgccctgaggacctgacatga
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