Ruegeria sp. THAF33: FIU92_18425
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Entry
FIU92_18425 CDS
T06269
Symbol
dnaE3
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rut
Ruegeria sp. THAF33
Pathway
rut03030
DNA replication
rut03430
Mismatch repair
rut03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FIU92_18425 (dnaE3)
03430 Mismatch repair
FIU92_18425 (dnaE3)
03440 Homologous recombination
FIU92_18425 (dnaE3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rut03032
]
FIU92_18425 (dnaE3)
03400 DNA repair and recombination proteins [BR:
rut03400
]
FIU92_18425 (dnaE3)
Enzymes [BR:
rut01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FIU92_18425 (dnaE3)
DNA replication proteins [BR:
rut03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FIU92_18425 (dnaE3)
DNA repair and recombination proteins [BR:
rut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FIU92_18425 (dnaE3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
Motif
Other DBs
NCBI-ProteinID:
QFT75021
LinkDB
All DBs
Position
pTHAF33_a:214638..218138
Genome browser
AA seq
1166 aa
AA seq
DB search
MSSSPRFIHLRVHTEYSLLEGAVRLKKLPGLCEKMEMPAVAVTDTNSMFSALEFSVTASG
AGVQPIMGCQVDLTYVQAQPGEKPKTPAPLVLLAQSETGYENLMKLSTCLYVDKGGQLPQ
VTLEELADRSEGLICLSGGPDGPVGMLLQQGQRPAAEALVDRLAAMFPNRFYIELQRHPG
EDGQPEAERLTERGHVEMAYAKNLPLVATNDVYFPTPDMYEAHDALICISEGAYVDQQEG
RRRLTAQHYFKSQQEMATLFADLPEAIENTVEIARRCAFMAYRRDPILPKFADDEVAELR
RIANEGLQKRLAVIPHAVTPEEYQERLDFELGIIESMGFPGYFLIVADFIQWAKDHDIPV
GPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIRYV
QQKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSKMIPVEGVKPVSIEKALK
DEPRLREAAREEEVVDRLLTYGQQVEGLLRNASTHAAGVVIGDRPLDALVPIYQDPRSDM
PATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFKSGRPLHIAADGTELYEPAEGAE
NQINAIPLDDEATYKLYSAAKTVAVFQVESSGMMDALKRMKPTCIEDIVALVALYRPGPM
ENIPTYCEVKNGQRQIQSVHPLIDHILEETQGIIVYQEQVMQIAQVMAGYSLGGADLLRR
AMGKKIKEAMDAERPKFEAGAAKNGVDAKKASEVFDLLEKFANYGFNKSHAAAYAVVSYQ
TGWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKGLGLPYVPPCVNRSLATFDVVDGQ
LVYALGALKNVGVEAMNLVVQGRGDKPFVNLFDFARRVDLKKVGKRPLEMLARAGAFDEL
DKNRRRVFESLDRLVQYSAAIHEQKNSNQVSLFGEAGDDLPEPRLSPTPDWLPAERLSEE
FKAIGFYLSGHPLDDYMPALKRKQVLTLDEVTEKARSGPLIAKMAGVVAGRQERKSAKGN
RFAFVQMSDPTGAYEVTLFSDTLEKCREFLETGAQVVLTAEATMEADQLKLLGRSVGPAD
SLVAEAGATGLRIYVDEAQAVPTVAKVLEDAASAAKGAARGPVQFMLLDPSLPGDIEMEL
GREFPINPQIKGAIKSLEGVMTVEEI
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgagcagttctccacgattcatccacctccgcgttcacactgaatattcccttctggaa
ggcgccgtgcggctgaaaaagctgccgggcctgtgcgagaagatggaaatgccggcggtc
gccgtgacggataccaattcgatgttttcggcgctggaattctcggtcaccgcaagcggc
gccggggtacagccgatcatggggtgccaggtcgatctgacctatgtccaggcccagccg
ggcgagaagccaaagacccccgcgcctctggtgctgctggcgcagtccgagaccgggtac
gaaaacctgatgaaactcagcacgtgtctctacgtggacaagggcgggcaactgcctcag
gtcactttggaagaactggccgaccgatctgaagggttgatctgcctgtccggtggacct
gacggcccggtgggaatgctactgcaacagggtcagcgcccggcggccgaagcgttggtc
gatcggctggcggcaatgttccccaaccggttttatatcgagcttcagcgccatccgggt
gaagatggccagcccgaggccgaacgcctgacagaacgcggccatgtcgagatggcctat
gccaagaacctgccgctggtcgccacgaatgacgtctatttcccgacgccggacatgtac
gaagcgcatgacgcgctgatctgcatatcggaaggggcctatgtcgaccagcaggaaggc
cgccgtcgtctgacggcgcagcactacttcaagtcacaacaagagatggcgaccctgttc
gccgatttgcccgaggccatcgaaaacaccgtcgagatcgccagacgctgcgcgttcatg
gcctatcgacgcgacccgatcctgccgaaattcgcggatgacgaggtggccgagctgcgg
cgcatcgccaatgagggcttgcagaaacgtctggccgtgatcccgcatgcggtgacgccc
gaggaataccaggaacgtctggatttcgaactgggcatcatcgaaagcatgggtttcccc
ggctactttctgatcgtcgcggatttcatccaatgggccaaggatcacgacattccggtc
gggccggggcggggctcgggcgcgggctcgctggtggcctatgcgctgacgatcaccgac
ctagacccgctgcgctacagcctgctgttcgaacggttcctgaaccccgagcgggtttct
atgcccgacttcgacatcgacttctgcatggatcgccgcgaagaggtgatccgttatgtt
cagcagaaatacgggcgcgacaaggtgggtcagatcatcaccttcggtgccttgctgtcc
aaggccgccgtgcgcgatatcgggcgggtgctgcaaatgccctatgggcaggtggaccgc
ctgtccaagatgatcccggtcgagggggtgaaacctgtttccatcgaaaaggcgctgaaa
gacgaaccccgcctgcgcgaggccgcgcgcgaggaagaggtggtcgaccgcctgctgacc
tatggccagcaggtcgaggggctgttgcggaatgcttcgacccacgcggcgggcgtggtg
atcggtgaccggccgctggatgcgctggtgccgatctatcaggacccgcgttcggacatg
cccgcgacccagttcaacatgaaatgggtggaacaggccgggttggtaaagttcgacttt
ctgggcctgaagaccctgaccgtgatccagaacgcgatggacctgattttcaaatccggg
cgcccgttgcacatcgccgccgatggcaccgaactttatgagccggctgagggggctgag
aaccagatcaacgccatcccgctggatgatgaggccacctacaagctctattccgcggcc
aagaccgtggcggtgttccaggtggaaagctcgggcatgatggacgcgctcaagcgcatg
aaacccacctgtatcgaggacatcgtggcgcttgtggcgctctatcgtcccggcccgatg
gagaacatccccacctattgcgaggtcaagaacggccagcgccagatccaatccgttcac
ccgctgatcgaccacatcctcgaggaaacgcagggcatcatcgtctaccaggagcaggtg
atgcagatcgcgcaggtcatggcgggctacagcctcggcggcgccgacctgctgcgccgc
gcgatgggcaagaagatcaaagaggcgatggacgccgaacgcccgaaattcgaggccggc
gcggccaagaacggggtggacgccaagaaggcctccgaagtgttcgacctcttggaaaaa
ttcgccaactacggcttcaacaagtcccacgcggcggcctacgcggtggtcagctaccag
accggctggctcaaggcgaaccacccggtcgagttcatggccggggtcatgaactgcgat
atccacctgaccgacaagctggcggtgtatttcgaagaggtccgcaagggtttgggcctg
ccctacgtgccgccctgcgtgaaccgctcgctggcgaccttcgacgtggtggatggccaa
ctggtctatgcgctgggcgcgctcaagaatgtcggcgtcgaggcgatgaatctggtggtg
cagggcaggggagacaagcctttcgtcaacctctttgactttgcccgccgggtcgacctg
aaaaaggtcggcaaacgtccgctggaaatgctggcgcgtgccggcgcttttgatgagctc
gacaagaaccgtcgccgcgtgttcgaaagccttgaccgtctggtacagtattcggcggcg
atccatgaacagaaaaactccaatcaggtgtctctgttcggtgaggcaggcgacgacctg
cccgaaccgcgcctgtcgccgacgcccgactggctgccggccgagcgcctcagcgaagaa
ttcaaggccatcggcttctatctctcggggcatccgctggacgattacatgcccgcgctg
aagcgcaaacaggtgctgacgctggatgaggttacggaaaaggcccggtccggtccgctc
atcgcaaagatggcaggggttgtcgccgggcggcaggaacggaaatcggccaagggcaac
cgctttgctttcgttcaaatgtctgatcccaccggcgcctatgaggtcacgctgttttcg
gacacgctggagaagtgtcgcgagtttctggaaaccggcgcgcaggtcgtgctgactgcc
gaggcaacgatggaagccgatcagctcaagctgctgggccgctctgttggtcctgcggat
tcccttgtggccgaggccggagcaactgggctgcgaatctacgttgacgaagcacaggcc
gtaccaacggtggccaaggtgttggaagacgccgcctctgccgcgaaaggggctgcacgg
ggaccagtccagttcatgttgctggaccccagcctgcccggcgatattgagatggaactg
ggacgtgaattcccaatcaacccgcagatcaagggcgcgatcaaatcccttgaaggcgtc
atgaccgtcgaagagatatga
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