Ruegeria sp. YS9: NOR97_03830
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Entry
NOR97_03830 CDS
T10219
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ruy Ruegeria sp. YS9
Brite
KEGG Orthology (KO) [BR:
ruy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ruy03019
]
NOR97_03830 (hrpB)
Enzymes [BR:
ruy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NOR97_03830 (hrpB)
Messenger RNA biogenesis [BR:
ruy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NOR97_03830 (hrpB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
HA2_N
ResIII
CON_HrpB
AAA_19
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UUV07742
LinkDB
All DBs
Position
1:complement(739536..741989)
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AA seq
817 aa
AA seq
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MTIRLPIDDAIPELLDTLRAQGRAVLQAPPGAGKTTRVPLAMLEAGLCDGRIVMLEPRRL
AARAAAERMAETLGERTGQTVGYRVRGEAKVSKDTRIEVVTEGILTRMLQTDPDLPGISA
VIFDEFHEQSLNADLGLALCLEVTGALRDDLILLAMSATLDADPVGALMAAPLVTSDGRS
FPVETRWLDRPLGPQARRLDGLVDLVVQAERETRKSGGGILVFLPGEGEIRRAESLLNGL
LPDSCVVRPLFGAMPFAAQRAAIAPVEHGRKVVLATSIAETSLTIPDIKVVVDMGQARRA
RFDPGSGMSRLVTERVTRAEATQRAGRAGRVAEGVCYRLWSKGEDGALAAYPPAEIEAAD
LTGLALELSLWGADPADLAFLTPPPEGTMAEARALLTMLGALDTNGRITDHGRALAALPL
HPRLGHMLVRAGPNAAPLAALMAERDPLRGAPVDITLRQEALRDPRAFQRNRIWQVNMGA
VDRINAETRRLRKQVKGDSADLSSAAMAALAYPDRIGQRRKGDAPRYVLSGGKGVVLDSA
DSLANAPFLVAIDTDGNPREAKVRMATQISERDIRDLFADQIRWVETCAWSKRERRVVSR
RQERFGAITLDDRIWKDVPDDAVARAMLDGIRDLGLRLEGAAARLAARVELVRADGVDLP
DFSVEGLMAEMDDWLLPMLSGVKSAEDWKKFDLLPALRARLDWAQMQELDRRAPGSFETP
LGRKVPIDYSAAVPEISVRLQEVFGVTRHPAIGGQPLKITLLSPAQRPIQITRDLPGFWA
GSYADVRKDMRAQYPKHPWPEDPTRADPTLRAKRRRE
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgacgatacgcctgcccatcgacgacgccatacccgaactgctggacactttacgtgcg
cagggtcgcgcggtgcttcaggcaccacccggtgcaggcaagaccacgcgggttcctctg
gcaatgctcgaggcaggtctgtgcgacggcaggatcgtgatgctggagccccggcggctg
gcggcccgggccgcagccgaacggatggccgagaccttgggagagcgcacaggccaaacc
gtgggttaccgtgtgcgcggcgaggcgaaagtgtcgaaagacacccggatcgaagtggtg
accgagggcatcctgacccggatgctgcaaaccgaccccgatctgcccggcatcagtgcg
gtgattttcgatgaattccatgaacagtctctgaacgccgatctggggctggccttgtgc
ctcgaggtaacgggcgcattgcgggacgatctgatcctgctggccatgtcagccacgctg
gatgcagatcccgtcggcgcgttgatggcggcgcctctggtcacatcggacgggcgcagc
tttccggttgagacgcgctggctggatcggccattgggaccgcaagcgcggcggttggat
gggttggtcgatctggtggttcaggccgagcgtgagacgcgcaagtcaggtggtgggatt
ctggttttcctgccgggagagggcgaaatccgacgcgctgaaagccttttgaacggtctg
ctgcccgacagttgcgttgtgcgcccgttgttcggagccatgccctttgcggcccagcga
gccgcgattgccccggtggaacatgggcgcaaagtcgtgctggcgacgtcgattgccgaa
acctcgctgacgatccccgatatcaaggttgtcgtggacatggggcaggcccggcgggct
cggttcgatccgggatcgggcatgtcacggctggtgacagaacgggtgacccgggccgag
gccacacagcgtgcgggccgggccggacgtgtggccgaaggggtgtgttaccggctctgg
tcaaagggggaagacggtgcgctggcggcctacccgcctgccgagatcgaagcggctgac
ctgaccgggctggcgctggagctgtcactgtggggcgctgacccggccgatcttgccttc
ctgactccacctcccgaagggacgatggccgaggcgcgggctttgctgacaatgctgggc
gcactcgataccaatggacggatcaccgatcatgggcgcgccctggcagcactgcccttg
catccccggctggggcacatgcttgtgcgggccggtccgaacgcggcccccttggcggcg
ttgatggcagagcgtgacccccttcgcggtgcgccggtggatatcaccctgcggcaagag
gcgctgcgcgacccccgggcctttcagcgcaacaggatctggcaggtcaacatgggcgca
gtggatcggatcaatgccgagaccagacggctgcggaaacaggtcaagggcgactcggct
gatctgagctccgccgccatggctgcgctggcctatcctgaccgcatcgggcagcggcgc
aagggtgacgcgccgcgctatgtgctgtcaggggggaaaggcgttgttctggacagtgcg
gattcactggccaacgcgccgtttctggtcgccatcgacacggatggcaacccgcgcgag
gcgaaggtccggatggccacccagatttcggaacgcgacatccgcgatctgttcgcggat
cagatccgctgggtcgagacctgcgcctggtccaaacgcgagcggcgggtcgtgtcgcgg
cggcaagagcggttcggcgcgatcacattggacgaccgcatatggaaggacgtccccgac
gacgccgtggcccgcgcgatgctggacgggatccgcgatctgggcttgcggctggaaggt
gccgccgcgcgcctggccgcccgtgtcgaactggtgcgtgccgatggcgttgatttgccc
gatttctctgtcgagggcctgatggccgagatggacgactggttgctgcccatgctgtca
ggtgtcaaaagcgccgaagactggaagaaattcgaccttttgcccgccctgcgcgcgcgg
ttggactgggcacagatgcaggaactggaccggcgcgctccggggtcatttgaaacgccc
ctgggtcgcaaggtgccaattgattacagcgctgccgtgcctgaaatctcggtccgcttg
caggaggtttttggcgtgacccgacacccggcaatcggcggccagcctttgaagatcacc
ctgctgtcaccagcgcagcgcccgatccagataacgcgtgacctgcccggtttctgggca
ggctcttacgcggatgtacgcaaggacatgagggcgcaatatcccaaacatccctggccc
gaagacccgacccgggctgatcccacgctgagggcgaagcgcagacgggaatag
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