KEGG   Ruegeria sp. YS9: NOR97_09500
Entry
NOR97_09500       CDS       T10219                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
ruy  Ruegeria sp. YS9
Pathway
ruy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ruy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NOR97_09500
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ruy03019]
    NOR97_09500
Enzymes [BR:ruy01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     NOR97_09500
Messenger RNA biogenesis [BR:ruy03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     NOR97_09500
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_22 CMS1 Utp25_C
Other DBs
NCBI-ProteinID: UUV04872
LinkDB
Position
1:1867486..1868751
AA seq 421 aa
MFDFDMLGLAPALNEALKRANFTQPTPIQNQAIPLALNGHDILGLAQTGTGKTLAFGLPL
IDHLLAQPGKPDPKTAKALILAPTRELVNQIADSLRTLTKGTKLRVATVVGGQSINKQIM
FLSRGTDILVATPGRLIDLMERGAVNLGAVRHLVLDEADQMLDLGFIHALRKIAPALGTP
RQTMLFSATMPKQMEELSRAYLTNPQRVQVSPPGKAADKITQSLHFVSKPGKPIKLREIL
SKDVDALTLVFTRTKHGAERLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRAGEINILV
ATDVAARGIDIPGVAYVINFDLPEVPDNYVHRIGRTARAGREGEAIAFCSAEEVDLLRQI
QKLMKIEIPVASGSMPEAVQPEKPARRPNNRRRGFKPKPAYGEGKPAANKRRRPRGKRPA
A
NT seq 1266 nt   +upstreamnt  +downstreamnt
ttgttcgactttgatatgctgggccttgccccggcactgaacgaggcactcaaacgcgcc
aatttcactcaacccacaccgatccagaaccaggcgattccgcttgctctgaatggtcac
gacattctgggactggcgcaaaccggcaccggaaagacattggctttcggcctgcctctg
atcgatcaccttctggcccaacccggcaagcccgacccgaaaaccgccaaggcactgatc
ctggcgcccacccgcgaactcgtgaaccagatcgccgacagcctgcgcaccctgacgaag
ggcaccaagctgcgcgtggccaccgttgtaggcggccagtcgatcaacaagcagataatg
ttcctctctcgtggcactgatattctggtcgccacaccgggtcgcctgatagacttgatg
gaacgtggtgcagtaaatctcggagcggtccgccatctggtgctggacgaagctgaccag
atgctcgaccttggctttatccatgcgttgcgtaaaatcgcgccggcactgggcactcca
cgccaaaccatgctgttttcggccaccatgccgaagcagatggaagagctcagccgcgct
tacctgaccaacccgcagcgggtgcaggtctcgcctccgggcaaagcggccgacaagatt
acgcagtcgttgcacttcgtttccaaacccggaaaaccaatcaagctgcgtgaaatcctt
tcgaaagatgtggatgccctgacactggtctttacgcgcaccaaacatggtgcagaacgg
ctgatgaagggcctagtagctgacggctacaacgccgcatccatccacggcaacaaaagc
cagggtcagcgcgatcgcgcgatcaaggcgttccgcgcgggtgaaatcaacattctggtg
gccaccgacgttgcggcccgaggcatcgacattccgggcgtcgcctacgtgatcaacttc
gatctgcccgaggtgcctgacaactacgtccaccgtatcgggcgcaccgcccgcgcaggg
cgcgaaggcgaagccatcgccttctgttccgcggaagaagttgatctgctgcgccagatc
caaaagctgatgaagatcgaaatcccagttgccagtggctcgatgcccgaagctgtgcaa
cctgaaaaaccggcgcgccgcccgaacaaccgccgccgggggttcaaacccaaacccgcc
tacggggaaggaaaacccgcggcaaacaagcggcgacgcccacgcggcaaacgtccggcg
gcgtaa

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