Ruegeria sp. YS9: NOR97_13050
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Entry
NOR97_13050 CDS
T10219
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ruy Ruegeria sp. YS9
Pathway
ruy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ruy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NOR97_13050 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ruy03021
]
NOR97_13050 (rpoC)
03400 DNA repair and recombination proteins [BR:
ruy03400
]
NOR97_13050 (rpoC)
Enzymes [BR:
ruy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NOR97_13050 (rpoC)
Transcription machinery [BR:
ruy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NOR97_13050 (rpoC)
DNA repair and recombination proteins [BR:
ruy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NOR97_13050 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
DUF7567
Motif
Other DBs
NCBI-ProteinID:
UUV05541
LinkDB
All DBs
Position
1:complement(2573300..2577541)
Genome browser
AA seq
1413 aa
AA seq
DB search
MNQEITNNPFNPLTPPKVFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTDLTYGQMLTEEEYMDAQDAYGMDAFT
ANIGAEAIREMLAQIDLEAEAEQLRADLAEATGELKPKKIIKRLKVVESFLESGNRPEWM
VMTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYVTLEREGMPGEGKVFGSIDEVQHAL
DSGEVHLHSKITARITQIDDEGNEVQKRFETTPGRLRLGALLPMNNKAPFELVNRLLRKK
EVQQVIDTVYRYCGQKESVIFCDQIMSMGFKEAFKAGISFGKDDMVIPDDKWGIVDDTRG
QVKDFEQQYMDGLITQGEKYNKVVDAWSKCNDRVTEAMMSTISSSDRAEDGSEQEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGDIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVREIDCGTERAITAEAAVNDGEVVASLAERVLGRV
AADDVLRPGTDEVIVAAGQLIDERMADMIDEAGVQSMRIRSPLTCESEEGVCATCYGRDL
ARGTMVNTGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFQEASQEGVVSFENPQ
ILVNAAGESLVMGRNMKLVIKDEHGEERASHKLGYGSKLFVKDGTKVARGDKLFEWDPYT
LPIIAEKAGTAKYVDLVSGLAVRDETDEATGMTQKIVIDWRAAPKGSDLKPEIILVDDNG
EPVRNDAGNPVHYPMSVDAILSVEDGQKIEAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEADGYVRFGRDYKNKRRISIEPADESMETIEYMVPKGKHIPVAEGDFIQ
KGEYLMDGNPAPHDILSIMGVEALADYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
ILDSGDTTLLKGEHVDKQEFDAANEKTIARGGRPAQGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKKDKLVGLKENVIVGRLIPAGTGGATQAVRHIAQSRDNVVIEARRE
EAEAAAALAAPIMDDDMVGDELDVLVETPESRE
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaaatcaccaacaacccgttcaacccgctgacgcccccgaaggtctttgac
gagatcaaggtttctctggcgtcgcccgagcggatcctgtcttggtcctatggcgagatc
aagaaacccgaaaccatcaactaccggacgttcaagcccgagcgtgacggtctgttctgc
gcgcgtatttttggcccgatcaaggactacgaatgtctgtgcggcaaatataagcggatg
aagtatcgcggcgttgtctgcgagaaatgcggtgtcgaagtcaccctgcagaaagtccgc
cgcgagcgtatgggtcacatcgaactggctgcgcctgttgcgcatatctggttcctgaaa
tcgctgccatcccgcatcggtctgatgctggatatgacgctgcgcgatctggaacgcgtt
ctgtactttgaaaactatgttgtcatcgagcccggtctgactgacctgacctatggccag
atgctgactgaagaagagtacatggacgcgcaggatgcctatggcatggacgcgttcacc
gccaatatcggtgctgaagccatccgcgagatgctggcccagatcgatctggaagccgaa
gccgagcagctgcgcgctgatctggccgaagcgaccggcgagctgaagcccaagaagatc
atcaagcgtctgaaggttgttgaatccttcctcgagtcgggcaatcggcccgagtggatg
gtgatgactgtgatcccggtcattccgccggaactgcgtccgctggttccgctggatggt
ggccgtttcgcgacctcggatctgaacgatctttatcgccgcgtcatcaaccggaacaac
cgtctgaagcgccttatcgaactgcgcgcacctgacatcatcgtccgcaacgaaaagcgg
atgttgcaggaatccgttgacgctctgttcgacaacggccgtcgtggccgcgtgatcacc
ggtgccaacaagcgtccgctgaaatcgctgtcggacatgctgaagggtaagcagggccgc
ttccgtcagaaccttctggggaaacgcgtcgacttctcgggtcgttcggtcattgtgacc
ggtccggaactcaagctgcaccagtgtggtctgcccaagaagatggcgttggaattgttc
aagccgtttatctactcgcgccttgaagccaagggtctgtcttcgactgtcaaacaggcg
aagaaactggtcgagaaagagcgtcccgaagtgtgggatatccttgatgaggtgatccgc
gaacaccctgtcatgctgaaccgtgcgccgacgctgcaccgtcttggcattcaggcattc
gaaccggttctgatcgaaggtaaagccatccagctgcacccgctggtctgttcggccttt
aacgccgacttcgacggtgaccagatggccgttcacgtgcccctcagccttgaggcgcag
ctggaagcccgtgttctgatgatgtcgactaacaacgttctgtcgcctgcaaacggcgcg
ccgatcatcgttccgtcgcaggatatgatcctgggtctctactatgtgactctagagcgt
gaaggcatgccgggcgaaggcaaggtgttcgggtcgatcgacgaagttcagcacgcgctg
gattccggcgaagtgcatctgcactcgaaaatcaccgcgcggatcacgcagatcgacgac
gaaggcaacgaagttcagaagcgtttcgagaccaccccgggccgtctgcgtctgggtgcg
ttgctgccgatgaacaacaaagcgccgttcgagctggtcaaccgcctgctgcggaagaaa
gaagtgcagcaggtgatcgacaccgtctaccgttactgcggtcagaaagagtcggtcatc
ttctgtgaccagatcatgtcgatgggcttcaaagaagcgttcaaggcgggcatttcgttc
ggcaaggacgacatggtcattccggacgacaagtggggcatcgttgatgacacccgcggt
caggtgaaggactttgaacagcagtacatggacggcctgatcactcagggcgaaaagtac
aacaaagttgtcgatgcctggtcgaagtgtaacgaccgcgtcaccgaagccatgatgtcg
acgatttcatcgtcggatcgggcagaggacggctccgagcaggagccgaactcggtctac
atgatggcccactcgggtgcgcgtggctcggtcactcagatgaaacagctgggcggtatg
cgcggcctgatggccaagccgaacggtgacatcatcgagacgccgatcatctcgaacttc
aaggaaggtctgaccgttctcgagtacttcaactcgacccacggtgcccgtaagggtctg
tcggataccgctctgaagacggcaaactcgggttacctgacccgtcgtctggtggacgtg
gcgcaggactgcatcgttcgtgagatcgactgcggcaccgagcgtgcgatcaccgccgaa
gcagccgtgaatgacggtgaggttgtcgcctcgctggccgaacgtgtgctgggccgtgta
gccgctgacgatgttctgcgtccgggcaccgatgaggtgatcgtcgcagccggtcagctc
atcgacgaacgtatggccgacatgatcgacgaagccggtgttcagtcgatgcgcatccgc
tcgcctctgacctgcgaatccgaagaaggcgtctgtgcgacctgctatggtcgtgacctt
gcacgcggtaccatggtgaacacgggtgaagctgtcggtatcatcgcggcgcagtccatc
ggtgaacccggtacacagctgaccatgcggaccttccacatcggtggtgttgcgcaaggt
ggtcagcagtcgttccaggaagccagccaggaaggtgtcgtttccttcgagaacccgcag
attctggtcaacgcagcaggcgaaagcctggtcatgggccggaacatgaagttggtgatc
aaggacgaacacggcgaagagcgtgccagccacaagctgggctacggctccaagctgttc
gtcaaggacggcaccaaggtggcccgtggcgacaagctgttcgagtgggatccctacacc
ctgcccatcatcgccgagaaagccggtactgcaaaatatgtcgatctggtttcgggcctc
gctgtccgcgacgagaccgacgaagcaaccggcatgacccagaagatcgtgatcgactgg
cgcgccgcccccaagggcagcgacctcaagcccgagatcattctggtggacgacaacggc
gagccggtccgcaacgacgcgggcaacccggttcactatccgatgtcggtggatgcgatc
ctatcggtcgaagatggccagaagatcgaggccggcgacgtcgtcgcgcgtattccgcgc
gaaggcgccaagaccaaggacatcaccggcggtctgccgcgtgtggccgaactgttcgaa
gcgcgccgtccaaaggatcacgcgatcatcgccgaggcagatggttacgtgcgcttcggt
cgcgactacaagaacaagcgccgcatcagcatcgaaccggcggacgagtccatggagacc
atcgaatacatggtgcccaagggcaagcacatcccggtcgccgaaggggatttcatccag
aagggtgaatacctgatggacggtaaccctgcgccgcatgacatcctgtccatcatgggt
gtcgaagcgctggcggattacatgatcgacgaagtgcaggacgtgtatcgcctgcaaggc
gtgaagatcaacgacaagcacatcgaggtcatcgtgcgccagatgttgcagaagtgggag
atcctggattcgggcgacaccaccctgctgaaaggcgaacatgtcgacaagcaggagttc
gacgcggcgaacgagaagaccatcgcccgcggtggtcgccctgctcagggtgagccgatc
ctgctggggatcaccaaagcttcgttgcagacgcgctcgttcatctctgcggcgtcgttc
caggagaccacccgcgtgctgaccgaagcttcggttcagggcaagaaggacaagctggtc
ggcctgaaagagaacgtcatcgtcggtcgcctgatccccgccggtaccggtggggcaacc
caggccgtccgccacatcgcgcagtcgcgtgacaacgtggtcatcgaagcacgccgggaa
gaggccgaggccgccgccgccctggccgcaccgatcatggatgatgatatggtcggggat
gagctggacgttctggtcgaaacaccggaaagccgcgaataa
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