Ruegeria sp. YS9: NOR97_13785
Help
Entry
NOR97_13785 CDS
T10219
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ruy Ruegeria sp. YS9
Pathway
ruy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ruy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NOR97_13785 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ruy03019
]
NOR97_13785 (rnr)
03016 Transfer RNA biogenesis [BR:
ruy03016
]
NOR97_13785 (rnr)
Enzymes [BR:
ruy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NOR97_13785 (rnr)
Messenger RNA biogenesis [BR:
ruy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NOR97_13785 (rnr)
Transfer RNA biogenesis [BR:
ruy03016
]
Prokaryotic type
tRNA degradation factors
NOR97_13785 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
MarR_2
Motif
Other DBs
NCBI-ProteinID:
UUV05685
LinkDB
All DBs
Position
1:complement(2722759..2725017)
Genome browser
AA seq
752 aa
AA seq
DB search
MTRIPTKQEVLDWISANPTLTSKRDIAKAFGIKGADRIDLKRILKELEAEGHLEKRKRSY
RDPDRLPPVSVLQVKAPNKDGDLFARPLEWHGEGVEPIVLIIARASDPALGEGDRILARL
TAVHEEDHNYEARLIRRIGTNPRKIVGIFRKGAEGGRIVPIDKAGSTEWLVAEGAALGAR
DGELVEAEQAGPKNRMGLPRARIVERLGDPTAPKAVSLIAIHQHGIPDDFPDKVIAEADK
AKPVGLKGREDLRDLPLLTIDPSDARDHDDACYAHADDDPKNPGGHVIWVAIADVAAYVR
PGTALDREARKRGNSSYFPDRVVPMLPDRLSGDLCSLHEGVPRACIAVRMRIDANGNKID
HRFVRGLMRSAASLNYAEVQEAIDGTPNDRTGPLLDSVLKPLYAAYGALKTARNERQPLE
LDLPERKIVLNDKGEVESVAFRERLDAHRLIEEFMILANVSAAETLIAKRSPLLFRVHEE
PAPEKLENLRETAQAAGLNLAKGQVLQTRHLNALLNAAAGTEDAELINLSTLRSMAQAYY
SPENFGHFGLALRNYAHFTSPIRRYADLIVHRALISAHGWGKDGLTEDEIARLEETATHI
SDTERRSMMAERDTTDRYLAAYLSERVGNEFTGRISGIARFGAFVKMDETGADGLVPVRS
LGREFFHFDREAGTLMGSESGLIIAIGQRVTVRLTEATPVTGGLELELLSIDDQALPRGR
GPAKRSTRRKAASTKRKKDKIKRKVERKRRQR
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgactcgcattcctaccaagcaggaggtcctggactggatctcggcgaaccccaccctg
acctcgaaacgcgatatcgccaaagcctttggcatcaagggcgcggatcggattgatctg
aaacgtatcctcaaggagcttgaggccgaaggccatcttgagaagcgcaagcgcagttac
cgcgacccggatcgcctgccgccggtcagtgtgttgcaggtgaaagctccgaacaaggat
ggagacctgtttgcgcggccgctggaatggcatggcgagggggtcgagcccatcgttctg
atcattgctcgtgccagcgacccggcgctgggcgagggtgaccgcattctggcccgtctg
acggccgtgcatgaggaagaccacaattacgaagcccgcctgatccgtcgtatcgggacg
aacccccgtaaaatcgtgggtatcttccgaaaaggggctgaaggcgggcggatcgtgccg
atcgacaaggccggatcgaccgaatggctggtggccgaaggcgccgcgctgggcgccagg
gatggcgaactggtcgaggccgaacaagccgggccgaaaaaccgcatggggctgccccgc
gcgcgcatcgttgaacggttgggcgacccgactgcgcccaaggccgtttcgttgatcgcg
atccatcagcacggtatcccggatgatttccccgacaaggtgattgccgaggccgacaag
gccaagcccgttggcctgaaaggccgcgaggacctgcgggatttgccgttgttgacaatc
gatccctcggacgcgcgcgatcatgacgatgcctgctatgcccatgctgatgacgacccg
aaaaacccgggcggacatgtgatctgggtcgcgattgccgatgtcgccgcctatgtgcgc
ccaggcaccgcgctggaccgcgaggcgcgcaagcgtggcaattccagctatttccccgac
cgtgtcgtgccgatgttgccggaccgtctgtcgggtgatctctgctcgctgcacgaaggc
gtgccgcgcgcctgtatcgcggtgcggatgcgcatcgatgcaaacggcaacaagatcgac
caccgctttgtgcgcgggctgatgcgctcggccgcgtccctgaactatgccgaggtgcag
gaggccatcgacggcacccccaatgaccgcaccggcccgctgctggacagcgttctgaag
ccgctctatgcggcctatggcgccttgaagacggcgcgcaacgaacgccagccgctggag
ctggacctgccggaacgcaagatcgttctgaacgacaagggcgaggtcgaaagcgtggcc
ttccgcgaacggttggacgcgcacaggctgatcgaggaattcatgatcctggccaacgtg
tccgcggccgagacgctgatcgccaagcgcagcccgttgttgttccgggtgcacgaagaa
cccgcgcccgaaaaactggaaaacctgcgcgaaacggcacaggccgccgggctgaatctg
gccaaggggcaggtgctccagacccgtcacctgaacgcgctgctgaatgccgccgccggc
accgaggatgccgagctgatcaatctcagcaccttgcggtcgatggcgcaggcctattac
agcccggaaaacttcggccatttcgggctggcgctgcgcaactacgcgcatttcacctcg
cccatccggcgctatgccgacctgatcgtgcaccgggcgctgatttcggcccatggctgg
ggcaaggacgggctgaccgaggacgaaattgcccggcttgaagaaacggccacgcatatt
tcggatacagaacgccgctcgatgatggccgagcgcgatacgaccgaccgctatctggcg
gcctatctcagcgaacgtgtgggcaacgaattcaccgggcggatcagtggcattgcccgg
ttcggggccttcgtgaagatggacgaaacgggcgcggatggcctggtgccggtgcggtct
ttggggcgcgaattcttccattttgatcgagaggcaggaacgctgatgggctcggaatcc
gggctgatcatcgccatcggccagcgggtcacggtgcggctgaccgaggcgacacctgtg
accggcgggttggaactggaactgctgtccatcgacgatcaggccctgccgcgcgggcgc
ggacccgccaagcggtcgacgcgacgcaaggcagccagcaccaagcgcaagaaggacaag
atcaagcgcaaggtcgaacgcaagcgccgtcaaaggtga
DBGET
integrated database retrieval system
