Ruegeria sp. YS9: NOR97_16935
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Entry
NOR97_16935 CDS
T10219
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ruy Ruegeria sp. YS9
Pathway
ruy03030
DNA replication
ruy03430
Mismatch repair
ruy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ruy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NOR97_16935 (dnaE)
03430 Mismatch repair
NOR97_16935 (dnaE)
03440 Homologous recombination
NOR97_16935 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ruy03032
]
NOR97_16935 (dnaE)
03400 DNA repair and recombination proteins [BR:
ruy03400
]
NOR97_16935 (dnaE)
Enzymes [BR:
ruy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NOR97_16935 (dnaE)
DNA replication proteins [BR:
ruy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NOR97_16935 (dnaE)
DNA repair and recombination proteins [BR:
ruy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NOR97_16935 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
Motif
Other DBs
NCBI-ProteinID:
UUV08248
LinkDB
All DBs
Position
2:109819..113322
Genome browser
AA seq
1167 aa
AA seq
DB search
MSSSPRFIHLRVHTEYSLLEGAVRLKKLPGLCEKMEMPAVAVTDTNSMFSALEFAVTASG
AGVQPIMGCQVDLTYVQAQPGEKPKTPAPLVLLAQSETGYENLMKLSTCLYVDKGGQLPQ
VTLEELAERSEGLICLSGGPDGPVGMLLQQGQRPAADALVDRLAAMFPDRFYIELQRHPG
EDGQPEAERLTERGHVEMAYAKNLPLVATNDVYFPTPDMYEAHDALICISEGAYVDQQEG
RRRLTAQHYFKSQQEMATLFADLPEAIENTVEIARRCAFMAYRRDPILPKFADDEVAELR
RIANEGLQKRLAVIPHAVTPEEYQERLDFELGIIESMGFPGYFLIVADFIQWAKDHDIPV
GPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIRYV
QQKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSKMIPVEGVKPVSIEKALK
DEPRLREAAREEEVVDRLLTYGQQVEGLLRNASTHAAGVVIGDRPLDALVPIYQDPRSDM
PATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFKSGRPLHIAADGTELYEPAEGAE
NQINAIPLDDEATYKLYSAAKTVAVFQVESSGMMDALKRMKPTCIEDIVALVALYRPGPM
ENIPTYCEVKNGQREITSVHPLIDHILEETQGIIVYQEQVMQIAQVMAGYSLGGADLLRR
AMGKKIKEAMDAERPKFEAGAAKNGVDAKKASEVFDLLEKFANYGFNKSHAAAYAVVSYQ
TGWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKGLGLPYVPPCVNRSLATFDVVDGQ
LVYALGALKNVGVEAMNLVVQGRGDKPFVNLFDFARRVDLKKVGKRPLEMLARAGAFDEL
DKNRRRVFESLDRLVQYSAAIHEQKNSNQVSLFGEAGDDLPEPRLSPTPDWLPAERLSEE
FKAIGFYLSGHPLDDYMPALKRKDVMTLDEVINAVRARGMMGVKMAGVVAGRQERKSAKG
NRFAFAQLSDPTGAYEVTLFSDTLEKCREFLETGAQVVLTAEATMEADQLKLLGRSVGPA
DSLVAEAGATGLRIYVDEAQAVPTVAKVLEDAASAAKGAARGPIQFMLLDPSLPGDVEMD
LGREFPINPQIKGAIKSLEGVMTVEEI
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgagcagctctccacgattcatccacctccgcgttcacactgaatattcccttctggaa
ggcgccgtgcggctgaaaaagctgccgggcctgtgcgagaagatggagatgccagccgtt
gccgtaacggataccaattcgatgttttcggcgctggaattcgcggtcaccgcaagcggg
gccggggtgcagccgatcatggggtgccaggtcgatctgacctatgtgcaggcccagccc
ggcgagaagccgaagacacccgcgcctctggtgctgctggcgcagtccgagaccgggtac
gaaaacctgatgaagctcagcacttgcctctacgtggacaagggcgggcaactgcctcag
gtcactttggaagaattggctgagcgatccgaagggttgatctgcctgtccggtggaccc
gacggcccggtcgggatgctgctgcaacagggtcagcgtccggcggccgacgcgttggtc
gatcggttggcggcaatgttccccgatcggttttacatcgagctccagcgtcatccgggt
gaggatggccagcccgaggccgagcgcctgaccgaacgtggccatgtcgagatggcctat
gccaagaacctgccgctggtcgccacgaatgacgtctatttcccgacgccggacatgtac
gaagctcatgacgcgctgatctgcatatcggaaggggcctatgtcgaccagcaggaaggc
cgccgtcgcctgacggctcagcactatttcaagtcgcaacaagagatggcgaccctgttc
gcggacttgcccgaggccatcgaaaacactgtcgagatcgccagacgctgcgctttcatg
gcctatcggcgcgacccgatcctgccgaaattcgcggatgacgaggtggccgagctgcgg
cgcatcgccaatgagggcttgcagaaacgtctggccgtgatcccgcatgcggtgacgccc
gaggaataccaggaacgtctggatttcgaactgggcatcatcgaaagcatgggtttcccc
ggctacttcctgatcgtcgcggatttcatccaatgggccaaggatcacgacattcccgtc
gggccggggcggggctcgggcgcggggtcactggtggcctatgcgctgacgatcaccgac
ctcgatccgctgcgctacagcctgctgttcgaacgcttcctcaaccccgaacgggtgtcg
atgcccgacttcgatatcgacttctgcatggaccgccgcgaagaggtgatccgctatgtg
cagcagaaatacgggcgcgacaaggtggggcagatcatcaccttcggtgccttgctgtcg
aaggccgccgtgcgtgacatcgggcgggtgctgcaaatgccgtatgggcaggtggaccgc
ctgtccaagatgatcccggtcgaaggcgtcaagccggtctcgatcgaaaaggccctgaaa
gacgaaccccgcctgcgcgaggccgcgcgcgaggaagaagtggtcgaccgcctgctgacc
tatggccagcaggtcgaggggttgctgcggaatgcttcgacccacgcggcgggggtggtg
atcggcgaccggcctctggatgcgctggtgccgatctatcaggacccgcgttccgacatg
cccgcgacccagttcaacatgaaatgggtggaacaggccgggctggtgaagttcgacttt
ctgggtctgaagaccctgaccgtgatccagaacgcgatggacctgatcttcaaatccggg
cgtcccttgcacatcgccgccgatggaaccgagctttatgaacccgccgagggggctgaa
aaccagatcaacgccatcccgctggatgatgaggcgacctataagctttactcagcagcc
aaaaccgtggcggtgttccaggttgaaagttcgggcatgatggatgcgctcaagcgcatg
aaacccacctgcatcgaggacatcgtggcccttgtggcgctgtatcgtcccggcccgatg
gagaacatccccacctattgcgaggtcaagaacggccagcgcgagatcacctcggtccac
ccgctgatcgaccatatcctcgaagaaacgcagggcatcatcgtctaccaggagcaggtg
atgcagatcgcgcaggtcatggcgggatacagccttggcggcgccgacctgctgcgccgc
gccatgggcaagaagatcaaagaggcgatggacgccgaacgcccgaaattcgaggccggc
gcggccaagaacggggtggacgccaagaaggcctccgaggtgttcgacctgctggagaaa
ttcgccaattacggcttcaacaaatcccacgcggcggcctatgcggtggtcagctaccag
accggctggctcaaggcgaaccacccggtcgagttcatggccggcgtcatgaactgcgac
atccacctgaccgacaagctggcagtatatttcgaagaggtccgcaaggggctgggcctg
ccttacgtgccgccctgcgtgaaccgctcgctggcgaccttcgacgtggtggatggtcag
ctggtctatgcgctgggcgcgctcaaaaatgtcggcgtcgaggcgatgaatctggtggtg
cagggcaggggagacaagccgttcgtcaacctctttgacttcgcccgccgggtcgatctt
aaaaaggtcggcaaacgtccgctggaaatgctggcgcgtgccggggcctttgatgagctc
gacaagaaccgccgccgcgtgttcgaaagccttgaccgcctggtgcagtattcggcggcg
atccatgaacagaaaaactccaatcaggtgtctctgttcggcgaggccggagatgacctg
cccgaaccgcgcctgtcgccgacgccggactggctgccggccgagcgcctcagcgaggaa
ttcaaggccatcggtttctacctgtcggggcacccgctggacgattacatgcccgcgctt
aaacgtaaagacgttatgacgctggacgaagtgattaatgctgtccgagctaggggaatg
atgggagtgaagatggccggggttgtcgccggtcggcaggagcggaaatcggccaagggc
aaccgctttgccttcgctcagctgtctgatcccaccggcgcctatgaggtcacgctgttt
tcggacacgctggagaagtgccgcgagtttctggaaaccggcgcgcaggttgtcctgact
gccgaggcgacgatggaagccgatcagctcaagctgctgggccgctcggttggccctgcg
gattccctcgtggccgaggccggggcaaccgggctgcgaatttacgttgacgaagcgcag
gctgtgccaacggtcgccaaggtgctggaagacgccgcctctgccgcgaaaggggccgca
cgggggccaatccagttcatgttgctggacccaagcctgcccggcgatgtcgaaatggat
ctggggcgcgaattcccgatcaacccgcagatcaagggcgcgatcaaatcccttgaaggt
gtgatgaccgtcgaagagatctga
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