Rhodomicrobium vannielii: Rvan_0220
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Entry
Rvan_0220 CDS
T01353
Name
(GenBank) double-strand break repair protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
rva
Rhodomicrobium vannielii
Brite
KEGG Orthology (KO) [BR:
rva00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rva03400
]
Rvan_0220
Enzymes [BR:
rva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rvan_0220
DNA repair and recombination proteins [BR:
rva03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
Rvan_0220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
ADP69510
UniProt:
E3I6E9
LinkDB
All DBs
Position
complement(262295..265570)
Genome browser
AA seq
1091 aa
AA seq
DB search
MTGGGAQLELGFSAARGSAVFACPPHRPFLPALAAAILDGALFGGGEPEPHDIPALNVYV
PSQAAVTPLKLALLDLSPCGATFLPRIRVLGDADPLDMFAAYAPHMDAGDALALLRDAVD
VPKPVGDIERRVHLSAAAMKAARDIHSTRMEFGEQLFSGVTATSAAKIAADIASLIDDAH
RERADLAKIDRLDRGHASGGEQISLQILRAVRKAWDAHKKRSRRLDREERRNRLMALEAA
FIRASDAPVIVAGSTGSVAATMGLMEALGGRARSAIVLHGLDRALDDASWQAIAEHPEHP
QHGLWQLLARLVVCRNEVSELETVRALPAGGDPIRAAFLSEAMRPASTTARWADYVAARK
AEGSRDAGATARDVWADVSLCDAPRGTLAPGLTLVEADTSQEEAVVVALILRAALEDEAA
HVALVTPDDALTARVRHALAAWGMASELPAAPRHAFALRVAATATSGKPEDFTALLRLGL
LEPRSAYLRQRESDLTEADPGADRDRFLRLAELVDLGAARQMWRPASMDGIPAALARAQH
AIASGEARHPAMRRIDAEAWDAARLLAGDVLDALSPLTENAADPASDAAPTLPFRRWVAA
HDEALARLAAIGLACDAGDDAPSLGDAFGVDAPSLALDINDYAAFFAELARGEPTPAAGS
PHPRLSLLSPLDARLLSADVIVLGGLNEGAWPQTPGPSPWLNRQDRAAIGLSPEERRIGQ
AAHDFASLAAAAPRVVLTRAKKANGSLARPSRWIARITTLARGTGRLAEIETGADWLEMA
RARRMPATVTPIAPPEPRPPLSARPRRLSVTAIETWFANPYAIYASFILDLKPLRRIGES
HDARDKGTLYHAALNRFFEAYPDRVPDDAAARLVACLDRSAEEFGFDLDAAPFWRPRFAR
FAEWFAATEAQRRDGLRLLKSEVGGKLKLVAEGAAGPFEVTARADRIDLGADGSLRIFDF
KTSANAATTSARRGAPQLALEGMLAMEGAFAGLPAGGAPDLCYIIASGGEPPGDIVTLKV
PSEEAIAAAKAGLLLRIARFDDEATPYAYEARAIFRDKADNDPYAHLARVKEWSAAADGE
DVGAEDGGGDE
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atgacaggcggcggcgcacagcttgagcttgggttttcggccgcgcgcggcagtgccgtc
tttgcttgcccgcctcaccgccctttcctgcccgcgctcgccgccgcgatcctcgacggc
gcgctgttcggcggaggcgagcccgagccgcacgacatccccgcattgaatgtctatgtg
ccgtcgcaagccgccgtcacaccgctgaagctcgcgctcctcgacctcagcccgtgcggc
gcaacctttctgccgcgcatccgcgtgctcggcgacgccgatccgctcgacatgttcgcg
gcctacgcgccgcatatggacgccggtgatgcgctcgccctccttcgcgatgcggtggac
gtgccgaaaccagtcggcgacatcgaacgtcgcgtccatctgagcgctgcggcgatgaag
gccgcgcgcgacatccacagcacgcggatggagttcggcgagcaattgttctccggcgtc
acggcgacgagcgcggcgaagatcgccgccgacatcgcaagcctcatcgacgacgcccat
cgcgagcgcgccgacctcgccaaaatcgaccggctcgacagaggccacgcctccggcggc
gagcagatttcactgcaaatcctgcgcgccgtgcgcaaggcgtgggacgcgcacaagaag
cgcagccggcggctcgaccgcgaggagcggcgcaaccgcctcatggcccttgaagcggcg
ttcatccgcgcgagcgacgcgccggtgatcgtcgccggttcgaccggcagcgtcgccgcg
accatggggctgatggaagcgctcggcggacgcgcgcgctcggccatcgtgctgcacggc
ctcgaccgcgcgctcgatgacgcgtcgtggcaggccatcgccgagcaccccgagcacccg
cagcatggtttgtggcagttgctcgcgcggctcgtcgtttgccgcaacgaggtgagcgag
cttgaaacggtgcgcgcgttgcccgctggcggcgatccgatccgcgcggcgttcctcagt
gaggccatgcggcccgcttccacaacggcgcgctgggcggattatgttgcggcgcgaaag
gccgagggcagccgcgatgcgggggcaaccgcccgcgatgtgtgggccgacgtttcactt
tgtgacgcgccgcgtggcaccctcgcgccggggctgacgctcgtcgaagcagacacgagt
caggaagaagcggtcgtcgtcgcgctgatcctgcgcgccgcgctcgaagacgaagccgcg
catgtcgcgctcgtgacgcccgacgatgcgctcacggcccgcgtccgtcatgccctcgcg
gcttggggaatggcgagcgaactgcccgccgcgcctcggcacgctttcgcgctacgcgtg
gcggcaacagcgacgagcggcaagcccgaggatttcacggcgctgctgcggctaggcctt
ctcgaacctcgatcagcttatctccgtcagcgcgagtccgatttgacggaggctgatcca
ggcgcggaccgcgaccgctttctccgcctcgccgaactggtcgatctcggagcggcgcgg
cagatgtggcggcccgcctcgatggacggcatcccggcggcgctcgcccgcgcgcagcac
gccatcgcgagcggcgaggcccgccaccccgccatgcgccggatcgatgccgaggcatgg
gacgccgcgcggctcctcgctggcgacgtgctcgacgcgctgtcgccgctcaccgaaaac
gccgccgacccggcatcagacgcggcgccgacacttcccttccggcgctgggtggcggcg
catgatgaagcgctcgcgcgtctcgccgcaatcggcctcgcctgcgatgcgggcgacgac
gcgccttcgcttggcgacgcgttcggcgtcgatgcgccctccctcgcgctcgacatcaac
gactacgccgcgtttttcgccgaactcgcgcgcggcgaaccgacgcccgctgcgggcagc
ccgcatccacgcctgtcgcttttgagtccgctcgacgcccgccttctgtctgccgatgta
attgtgctcggcgggctgaacgaaggcgcgtggccgcagacgccggggccaagcccgtgg
ctcaatcggcaggaccgcgccgctatcggcctctcccccgaagaacgccgcatcgggcag
gccgcgcatgatttcgcctcgctggccgcagccgcgccgcgcgtcgtactcacccgcgcg
aaaaaggcaaacggcagcctcgcgcgcccgagccgctggatcgcgcgcatcaccacgctt
gcgcgcggcacgggccggctcgccgagatcgagaccggcgcggattggctcgaaatggcg
cgggcgcgtcgcatgcccgcgacggtcacgcccattgcgccgccggagccgcgtccgccg
ctgtccgcacgcccgcgccgcctgtccgtcaccgccatcgagacgtggtttgcgaacccc
tatgcgatttacgcaagcttcatccttgacctcaaaccgctccgccgcatcggcgaaagc
catgacgcgcgcgacaagggcacgctctatcatgcggcgctcaatcggtttttcgaggcg
taccctgaccgcgtgccggacgatgcggcggctcgcctcgttgcatgcctcgaccgctcg
gctgaggaattcggcttcgacctcgacgccgcgccgttctggcggccgcgcttcgcccgc
ttcgccgaatggttcgcggcgacggaagcgcagcggcgcgatggattgcggctgttgaaa
agcgaagttggtggcaagctgaagctcgtggcggagggagcggccgggccgttcgaggtg
acggcgcgcgccgatcgcatcgacctcggcgcggatggcagcttgcgcatcttcgacttc
aagacgagcgcgaacgcggcgacgacatccgcgcggcgtggcgctccccaactcgcgctg
gaaggcatgctcgccatggaaggcgcgttcgcggggctgcccgcaggcggcgcgcccgac
ctttgctatatcatcgcgtcgggcggagagccgccgggcgacatcgtcacgctgaaggtg
ccgagcgaggaagccatcgccgccgcgaaggccggtttgctcctgcgcatcgcgcgcttc
gacgacgaggcgacgccctacgcctacgaagcccgcgccatcttcagggacaaggccgac
aacgacccttacgcgcatctggcgcgcgtgaaggaatggtcggcggcggctgacggcgaa
gacgtaggcgcggaagacggaggcggcgatgagtga
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