Rhodomicrobium vannielii: Rvan_0854
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Entry
Rvan_0854 CDS
T01353
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
rva
Rhodomicrobium vannielii
Brite
KEGG Orthology (KO) [BR:
rva00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rva03016
]
Rvan_0854
Enzymes [BR:
rva01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Rvan_0854
Transfer RNA biogenesis [BR:
rva03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Rvan_0854
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
ADP70130
UniProt:
E3I1R1
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All DBs
Position
complement(951073..952287)
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AA seq
404 aa
AA seq
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MFVKNASQSREPPHSPSYNKRMIDLPPVITSITDLKTLCDALAGQPYVTVDTEFMRQTTY
RPKLCLIQMAAPGIEAVVDPLPNLDLSPFYALMANTAVVKVFHAARQDIEIVWQEAGVIP
MPLFDTQIAAMALGHGDAISYGALVKKLLKKNHDKTYQAIDWCQRPLGPKQLEYALGDVT
YLRDVYAKLKQRLEQTGREPWLEEEVAVLTDPKTYAFDPADAWKRLKLGGKSRTARSIIM
ELAAWRERAAQDENVPRGRVLKDEAIYEVAKHAPRTLETLSRLRSVRDSVRSRGDAILRA
VEAALGRDPGDVVNAAAHVDLSAGASATVELLRVLLKAVSAELDIAPKLLASAEDLEKLA
QYDDPDVPALKGWRRPLFGDKALALKEGRLALGIKKNEVAVFPL
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtcaagaatgcgagccagtcacgagagccgccccacagcccgagctacaataaa
agaatgattgatctgccgcccgtcattacctccatcacagacctcaagacgctttgcgat
gcgcttgctggccagccctacgtgaccgttgacaccgagttcatgcggcagacgacctac
cggccgaagctctgtcttatccagatggccgcgccgggtatcgaggccgtcgtcgatccg
ctgccgaacctcgacctgtcgccgttttacgcgctgatggcgaataccgccgtcgtgaag
gtcttccacgccgcccgtcaggatatcgaaatcgtctggcaggaagcgggggtgatcccg
atgccgctgttcgatacgcagatcgcggcgatggcgctcggccatggcgacgcgatctcc
tacggcgcgctcgtcaagaagctgctgaagaagaaccacgacaagacctatcaggccatc
gattggtgccaacgtccgctcgggccgaagcagctcgaatatgcgctcggcgatgtcacc
tatctgcgcgacgtctacgccaagctgaagcagcggcttgagcagaccggccgcgaaccg
tggcttgaggaagaagtcgccgtcctcaccgatcccaagacctacgctttcgatccggcc
gacgcgtggaagcgcctcaagctcggcggcaagtcgcgcacggcgcgctccatcatcatg
gagcttgcggcctggcgcgaacgtgcggcgcaggacgagaacgtgccgcgagggcgcgtg
ctcaaggacgaagcgatctacgaggtggccaagcacgcgccgcgtacgctcgaaaccctg
tcgcggctccgctccgtccgcgacagcgtcaggtcgcgcggcgatgcgatcctgcgcgcg
gttgaggccgcacttggccgcgatccgggcgacgtggtgaacgcggcggcgcatgtcgat
ctttcggccggggcttccgccaccgtcgagcttctgcgcgtgctgctcaaggccgtctcc
gccgaactcgacatcgcgccgaagcttctcgccagcgccgaggatctcgaaaagctcgcg
caatatgacgacccggacgtgcccgcgctaaagggctggcggcgtccgctgttcggcgac
aaggcgctcgcgctgaaggaaggccgcctcgcactcggcatcaagaagaacgaggtcgcg
gtctttccgctgtag
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