Rhodomicrobium vannielii: Rvan_1020
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Entry
Rvan_1020 CDS
T01353
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
rva
Rhodomicrobium vannielii
Pathway
rva03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rvan_1020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rva03400
]
Rvan_1020
DNA repair and recombination proteins [BR:
rva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rvan_1020
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Rvan_1020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_29
AAA_16
nSTAND1
AAA_21
BCA_ABC_TP_C
DnaJ_CXXCXGXG
AAA_25
nSTAND3
AAA_23
Motif
Other DBs
NCBI-ProteinID:
ADP70294
UniProt:
E3I300
LinkDB
All DBs
Position
1133106..1136048
Genome browser
AA seq
980 aa
AA seq
DB search
MTQTHIAIRGAREHNLKNVSLDIPREKLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLS
AYARQFLEMMQKPDVDLIDGLSPAISIEQKTTSRNPRSTVGTVTEIYDYMRLLWARVGVP
YSPATGLPIESQTVSQMVDRVLELPEGTRLYLLAPMIRGRKGEYRKELADLQKRGFQRVK
IDGTFYEIPDAPALDKKFKHDIDVVVDRIVVRGDIGTRLADSFETALELADGIAIVEFAD
APKAEPDAGGKKKKSAPKPDEPRRITFSQRFACPVSGFTIDEIEPRLFSFNNPFGACPKC
DGLGTELKFEPQLVVPDQSLSLRKGAIVPWARTGNTSPYYTQTLDAIAAHFNVSMDTPWS
KLPKKVQDTILFGSGGEVIAFIYDDGMRTYTTRKAFEGVVTNIERRWKETDSQWVREELS
RYQSNQPCEECNGFRLKPQALAVKIDGLHIGEASRLSIKAANDWFATLSGKLTAKQNEIA
TRILKEIRERLRFLNDVGLDYLALSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPS
IGLHQRDNARLLDTLKHLRDLGNSVIVVEHDEDAILTADHVVDIGPGAGVHGGRVIAEGT
PADIKAHPESLTGQYLTGKREVPLPTARRKIDKRRMLTVRGARGNNLKDVTASIPLGCFT
AVTGVSGGGKSTLLIETIQKAASRRLNGGGETPEPFDALDGIEFLDKVIDIDQSPIGRTP
RSNPATYTGAFGPIRDWFAGLPESKARGYLPGRFSFNVKGGRCEACQGDGVIKIEMHFLP
DVYVTCDVCKGHRYNRETLDIKFKGKSIANVLDMTVDEAAEFFKAVPSVRDKMETLQRVG
LGYIKVGQQATTLSGGEAQRVKLSKELSRRATGKTLYILDEPTTGLHFHDVAKLLEVLHQ
LVDAGNTVAVIEHNLEVIKTADWVIDLGPEGGDGGGRIVAEGRPEDIAEAGGSYTGQFLK
ELLKRRPAAKGKAKVARAAE
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
ttgacacagacacatatcgcgatacgcggcgcgcgcgagcataacctcaagaacgtctcg
ctcgacattccgcgcgaaaagctcgtggtcatcacgggcctgtccggctccggcaaatcg
agcctcgccttcgacacgatctatgccgagggccagcgtcgctatgtcgaaagcctgtcg
gcttatgcgcggcagtttctggagatgatgcagaagccggacgtcgatctcatcgacggc
ctgtcgcccgccatctccatcgagcagaagacgacgagccgcaacccgcgctccaccgtc
ggcaccgtcaccgaaatctacgactacatgcgtctgctgtgggcgcgcgtcggtgtgccc
tattcgcccgcgaccgggcttcccatcgagagccagaccgtcagccagatggtggatcgc
gtgctcgaattgcccgagggcacgcggctttacctgctcgcgccgatgatccgcggccgc
aagggcgaataccggaaggaactcgccgacctccagaagcgcggctttcagcgcgtgaag
atcgacggcacgttctacgaaatcccggacgcgccggcgctcgacaagaaattcaagcac
gacatcgacgttgtcgtggatcgtatcgtggtgcgcggcgatatcggcacgcggcttgcg
gacagcttcgagacagcgctggaactcgcggacggcatcgccatcgtggaattcgccgac
gcgcccaaggccgagccggatgcgggcggcaagaagaaaaagtccgcgccgaagcccgac
gagccgcgccgcatcaccttctcgcagcgcttcgcctgccccgtctcgggcttcaccatc
gacgagatcgagccgcgcctgttctcgttcaacaacccgttcggcgcctgcccgaaatgc
gacggcctcggcacggagcttaagttcgagccgcaactcgtcgtgcccgatcagtcgctc
agcttgcgcaagggcgcaatcgtcccgtgggcgcgcacgggcaacacctcgccctattac
acgcagacgctcgacgccatcgccgcgcacttcaacgtgtccatggatacgccgtggagc
aagctgccgaaaaaggtgcaggacacgatcctgtttggctcgggcggcgaggtgatcgcg
ttcatttatgacgacggcatgcgcacctacacaacgcgcaaggctttcgagggcgtcgtc
acgaatatcgagcggcgctggaaggaaacggacagccagtgggtgcgcgaggagctttcg
cgctatcagtcgaaccagccctgcgaggaatgcaacggcttccgcctgaagccgcaggca
ctcgcggtgaagatcgacgggctccatatcggcgaggcgtcgcgcctgtcgatcaaggcg
gcgaacgactggttcgcgacgctgtcgggcaagctgaccgcgaagcagaacgaaatcgcg
acgcgcattctgaaggaaatccgcgagcgcctacgcttcctgaacgacgtcggcctcgat
tatctcgcgctgtcgcgcaactcgggtacgctgtccggcggcgaaagccagcgcatccgc
ctcgcctcgcagatcgggtcggggctgacgggcgtgctctatgtgctcgacgagccgtcc
atcggcctccaccagcgcgacaacgcgcgcctgctcgacacgctgaagcatctgcgcgac
ctcggcaattcggtgatcgtggtcgagcatgacgaggacgcgatcctcaccgccgaccat
gtggtcgacatcggccccggtgcgggcgtccatggcgggcgcgtgatcgcggaaggcacg
cccgccgacatcaaggcgcacccagagagcctcaccgggcaatatctcaccggcaagcgc
gaggtgccgctgccgacggcgcgccgcaagatcgacaagcgccgcatgctgaccgtgcgg
ggcgcgcgcggcaacaatctgaaggacgtcacggcgtcgatcccgctcggctgcttcacg
gcggtgacgggcgtttcgggcggcggcaagtccacgctcctcatcgagacgatccagaaa
gcagcgtcgcggcggctcaacggcggcggcgagacgcccgaaccgttcgacgcgctcgac
ggcatcgagtttctcgacaaggtcatcgacatcgaccagtcgcccatcggccgcacgccg
cgctcgaacccggccacctacacgggcgcgttcggcccgatccgcgactggttcgcgggg
ctgcccgaatcgaaggcgcgcggctatctgccggggcgcttttcgttcaacgtgaagggc
gggcgctgcgaggcgtgccagggcgacggcgtcatcaagatcgagatgcacttcctgccg
gacgtctatgtgacgtgcgacgtctgcaaaggccaccgctacaatcgcgagacgctcgac
atcaagttcaagggcaagtccatcgccaacgtgctcgacatgacggtggacgaggcggcc
gagttcttcaaggcagtgccctccgtgcgcgacaagatggagacgctgcaacgcgtcggc
ctcggctacatcaaggtgggccagcaggcgacgacgctgtcgggcggcgaggcgcagcgt
gtgaagctgtcaaaggagctgtcgcggcgcgccaccggcaagacgctgtacatcctcgac
gagccgaccacggggttgcatttccacgacgtggcgaagctgctcgaagtgctgcaccag
ctagtggacgcgggcaacacggtggctgtgatcgagcacaatctcgaagtgatcaagacc
gccgactgggtgatcgacctcggccccgagggcggcgacggcggcggccgcatcgtggcg
gagggccgcccggaggacatcgcggaggcggggggcagctataccgggcagttcttgaag
gagctgctcaagcgccgccccgccgcgaagggcaaggcgaaggtggcgcgggctgctgag
tga
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