Rhodomicrobium vannielii: Rvan_1828
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Entry
Rvan_1828 CDS
T01353
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rva
Rhodomicrobium vannielii
Pathway
rva03420
Nucleotide excision repair
rva03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rvan_1828
03430 Mismatch repair
Rvan_1828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rva03400
]
Rvan_1828
Enzymes [BR:
rva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rvan_1828
DNA repair and recombination proteins [BR:
rva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rvan_1828
MMR (mismatch excision repair)
Other MMR factors
Rvan_1828
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PcrA_UvrD_tudor
DUF3553
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ADP71070
UniProt:
E3I035
LinkDB
All DBs
Position
1998238..2000619
Genome browser
AA seq
793 aa
AA seq
DB search
MPATACYICSMATSLNIAAAIAASNALAPEPPYLQGLNAEQREAVERLDGPVLVLAGAGT
GKTRVLTTRMAHLLWTHRARPNEILAVTFTNKAAREMKERVGKLVGGAVEGMPWLGTFHS
IGMRILRRHAELVGLSQNFTILDVDDQIRLIKQIIQAERLDDKRWPARQLAGLIDGWKNK
GLVPEKVPAGDAFSFANGRGIELYAAYQKRLKDLNAVDFGDLLLENIRLFQNNPDVLKQY
HRWFTYIMVDEYQDTNVAQYLWLRLLAQGSRNICCVGDDDQSIYGWRGAEVDNILRFEQD
FPGAHVIRLEQNYRSTPHILGAASKLIANNAGRLGKTLRTGIDGADMGEKLAVRGIWDDD
EEARLAAEDIDRFRREGIALNDIAILVRASFQMRAFEDRFVTMGMPYRVIGGPRFYERQE
IKDAIAYLEVLQNPAADLRFERIVNVPKRGLGEQAVQTIFGHARAEGLSLFHAARQITET
EELKPAARRSLRALTDCFERWRSLMGAMPHTELAELILDESGYTEMWQKDKSPQAQTRLE
NLKELIRFMDQFDNLAAFLEHVSLVMDADQAADGDRVSLMTLHGAKGLEFGVVFLPGWEE
GLFPHQRALDENGQEGLEEERRLAYVGITRAKRRLTISFAQNRRVHGSWQSALPSRFLDE
LAVEHAELKIESGGYGYGRFGAANGGYGASRFDEPEVSPFDYEERGTPGWKRAQTNWRSE
GAAKNRQRPVPREIDGELVAKSVAEVCAFSVGQRIFHQKFGYGRVAEIEGNKLTVDFEKA
GQKKVVASFVEAV
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atgccggccaccgcgtgctatatctgttccatggcaacgagtctgaacatagcggcggcc
atcgccgcatcgaacgcgctggcgcccgagccgccctatctccaaggtctgaacgccgag
cagcgcgaagccgtcgaacgtctcgacgggccggtgctggtgctcgcgggcgcgggcacg
ggcaagacgcgcgtgcttaccacgcgcatggcgcatcttctgtggacgcatcgcgcgcgg
ccgaacgaaatcctcgccgtcaccttcaccaacaaggcggcgcgcgaaatgaaggagcgc
gtcggcaagcttgtcggcggcgcggtggagggcatgccgtggctcggcactttccactcc
atcggtatgcgcatcctgcggcgccacgcggagcttgtcggcctctcgcagaatttcacg
atcctcgacgttgacgaccagatccggctcatcaagcagatcatccaggcggagcggctg
gacgacaagcgctggcccgcgcggcaactcgcggggctgatcgacggctggaagaacaag
ggcctcgtgccggagaaggtgccagcgggcgacgcgttttccttcgcgaacgggcgcggc
atcgagctttacgcggcctatcagaagcggctcaaggatttgaacgccgtcgatttcggc
gatttgctgctcgaaaacattcgcctgtttcagaataacccggatgtgctgaagcaatac
caccgctggttcacctacatcatggtggacgagtatcaggataccaacgtcgcgcagtat
ctctggctgcgccttctcgcgcagggcagccgcaacatctgctgcgtcggcgacgacgac
cagtccatctacggctggcgcggcgcggaagtggacaacatcctgcgcttcgagcaggac
tttcccggcgcgcatgtcatccgcctcgaacagaactatcgctccacgccgcacatcctc
ggcgcggcttcgaagctcatcgcgaacaatgctggccgtctcggcaagacgctgcgtacc
ggcatcgatggcgcggacatgggcgaaaagctcgctgtgcgcggcatctgggacgatgac
gaagaggcacgcctcgccgccgaggacatcgaccgcttccgccgcgagggcattgcgctg
aacgacatcgcgatcctcgtccgcgcgagctttcagatgcgtgcctttgaagaccgcttc
gtgacgatgggcatgccgtaccgcgtcatcggcggcccgcgcttctacgagcggcaggaa
atcaaggacgccatcgcctatctcgaagtgctgcaaaatccggcggccgatctccgcttc
gagcgcatcgtgaacgtgccgaagcgcgggctcggcgaacaggccgtgcaaaccatcttt
ggccatgcgcgcgccgaggggctgagcctgttccacgccgcgcggcagatcaccgagacg
gaggagttgaagcccgcggcgcgccggtcgctgcgcgcgctaaccgattgcttcgagcgc
tggcgcagcctcatgggcgcgatgccccacacggagcttgccgaactgatcctcgacgag
tccggctacaccgagatgtggcagaaggacaagtctccgcaggcgcagactcggctcgaa
aacctgaaggaactcattcgcttcatggatcagttcgacaacctggctgcgtttctggag
cacgtttccctcgtgatggacgccgatcaggccgccgatggcgaccgcgtcagcctcatg
acgctgcacggggcgaagggcctcgaattcggcgtggtgttcctgcccggctgggaggag
gggctgttcccgcatcagcgcgcgctcgacgagaacgggcaggaggggctggaggaggag
cgccgcctcgcctatgtcggcatcacgcgtgcgaagcggcggcttaccatcagcttcgcg
cagaaccggcgcgtgcacggctcatggcagtcggcgctgccgtcgcgcttcctcgatgaa
cttgcggtcgagcatgccgaactcaagattgagagcggcggctatggttacgggcggttt
ggtgcggcgaatgggggctacggcgcgagccggttcgacgagcccgaggtttcgccattc
gattacgaggagcgcggcacgcccggctggaagcgcgcgcagacgaactggcggagcgag
ggcgcggcgaaaaatcgtcagcggcccgtcccgcgcgagatcgacggcgagctcgtggcg
aagagcgtcgccgaggtgtgcgcgttctcggtcggccagcgcattttccaccagaagttc
ggctatggccgcgtggccgagatcgagggcaacaaactcaccgtggatttcgagaaggcc
ggacagaagaaggttgtcgccagtttcgtggaggcggtttag
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