Rhodomicrobium vannielii: Rvan_1983
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Entry
Rvan_1983 CDS
T01353
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rva
Rhodomicrobium vannielii
Pathway
rva03030
DNA replication
rva03430
Mismatch repair
rva03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Rvan_1983
03430 Mismatch repair
Rvan_1983
03440 Homologous recombination
Rvan_1983
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rva03032
]
Rvan_1983
03400 DNA repair and recombination proteins [BR:
rva03400
]
Rvan_1983
Enzymes [BR:
rva01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Rvan_1983
DNA replication proteins [BR:
rva03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Rvan_1983
DNA repair and recombination proteins [BR:
rva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Rvan_1983
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
T2SSK
Motif
Other DBs
NCBI-ProteinID:
ADP71218
UniProt:
E3I1C7
LinkDB
All DBs
Position
complement(2163579..2167034)
Genome browser
AA seq
1151 aa
AA seq
DB search
MTKPGFIHLHVHSAYSLLEGALPVKALIKAAAADGQPALAITDRNNLFGALEFSEYLSGE
GIQPIIGCALTLAFPAPADETPRPGQRPDAHSGTIVLLAKDAEGYGNLMRLSSRAFLDSG
DGSNPHVEVEFLVEHAGGLIALSGGPDGPADRAFAAGNAAIAEARLATLAEAFGNRFYVE
IQRHGLARERAVEPQLLRWAYDNGVPLVATNEAYFPKRAVFEAHDALLCIAEGRYVAEDD
RRRLSPDHWLKPQADMVKLFADLPEAVANTIEIAQRCAFRPRPRKPILPQFVAGSEDTHE
AEAAELRRQAIAGLEHRLATIPAHFHAASKDEYFKRLEFELDVITRMKFPGYFLIVSDFI
KWAKAQGIPVGPGRGSGAGSVVAWSLTITDLDPIRFGLLFERFLNPERVSMPDFDIDFCQ
DRRDEVIQYVRAKYGSNRVAQIITYGKLQARAVLRDVGRVLQMPYGQVDRLCKLVPNNPA
NPVTLAEAIEGEPQLQEARDREEIVAQLLDTAQKLEGLYRHASTHAAGVVIGDRDLVELV
PLYRDPKSDMLVTQFNMKWVEQAGLVKFDFLGLKTLTVLQKACALLEKAGRPIDLGHLPL
DDRPTYEMLAKGDTGGVFQLESTGMREALRKLKPDRFGDIIAMVALYRPGPMDNIETYVN
RKHGIEVPDYLHPLAKPILEETYGVIIYQEQVMQLAQVLSGYSLGEADLLRRAMGKKIKA
EMDAQGARFVKGALEKDIPEARARYIFELVAKFAGYGFNKSHAAAYALIAYQTAYLKANH
AQEFIAASMTLDMANTDKLYAFTREAKRNGLAILPPSVNKSAVEFEPEGDNAIRYALAAL
KNMGHAAAAHIVEARGDKPYRDLADFMLRINPKALNKRGIETLNAAGAFEDMETNRAKVA
KNLDRLVEFGSKAAEDRARGQEDMFGGGIAGSPAPRLDLADAPEWSLVETLENELGAAGF
YLSGHPLDDFTDQLARMNVLKWSDFSARVQAHGRAESRLAATVTYRQDRKAKSGNRFAFA
GFSDPTGQFEAVIFSDTLNVAGDKLEAGKNVLVHVEGEADGEAIKVRVQAVQALDEVLGK
ITKQVSITATERLQVAELVKHLGREGGIQVNLVVQIPEAQKAVEFKLGDNFSITARQLAT
LKTLPGVLQVG
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaaccgggcttcatccacctccacgttcattccgcctattcgctgcttgaaggc
gcgttgccggtcaaggcgctcatcaaggccgccgccgccgatggccaacccgcgctcgcc
atcaccgaccgcaacaatttgttcggcgcgctcgaattctccgaatacctgtcgggcgag
ggcatccagccgatcatcggctgtgccttgacgcttgcgttccccgcacccgccgacgag
acgccgcgcccaggccagcggcccgacgcgcattcgggaacgatcgtgcttctggcgaag
gacgcggagggctatggcaacctgatgcggttgtcgagccgggcgtttctcgactcgggc
gacggctcgaacccgcatgtcgaggtcgagtttctggtggagcacgcgggcggcctgatc
gcgctttcgggcgggccggacgggccggcggatcgcgccttcgctgccggaaacgccgcc
atagccgaagcgcgcctcgccacgctggcggaggcgttcggcaaccgcttctatgtcgaa
atccagcgccacgggcttgcccgcgagcgcgcggtggagccgcagcttctgcgctgggcc
tacgataatggcgtgccgctcgtcgccaccaacgaagcctatttcccgaagcgcgccgtc
ttcgaggcgcatgacgcgctgctttgcatcgccgagggtcgctacgttgccgaagacgac
cgccgccgcctctcgcccgatcattggctgaagccgcaagccgacatggtgaagctgttt
gcggatttgcccgaggcggtcgcgaacaccatcgagatcgcgcagcgctgcgcgttccgc
ccgcgcccgcgcaagccgatcctgccgcaattcgtggccggcagcgaggacacgcacgag
gctgaagcggcggagcttcgtcggcaggcaatcgctggactggaacacaggctcgcaacg
atcccggcccatttccacgccgccagcaaagacgaatatttcaagcgtctcgaattcgaa
ctcgacgtcatcacgcgcatgaagttccccggatacttcctgatcgtgtcggacttcatc
aaatgggcgaaggcgcagggcattccggtgggaccagggcgcggctcgggcgctggctcg
gtcgtcgcgtggtcgctcaccatcaccgacctcgacccgatccgcttcggtctgctgttc
gagcgcttcctcaacccggaacgcgtgtcgatgccagacttcgacatcgacttctgccag
gatcgtcgcgacgaggtgatccagtacgtgcgcgcgaaatatggctcgaaccgcgtcgcg
cagatcattacctacggtaagcttcaggcgcgcgcggtgctgcgcgacgtggggcgcgtg
ctgcaaatgccctacgggcaggtggaccgcctctgcaagctcgtgccgaacaatccggcg
aacccggtgacgctcgcggaagcgatcgagggcgagccgcagcttcaggaggcgcgcgac
cgcgaagagatcgtggcgcagcttctcgacacggcgcagaagctcgaagggctgtatcgt
cacgcttcgacgcacgcggcgggtgtggtgatcggcgaccgtgacctcgtggagcttgtg
ccgctctaccgcgatccgaaatccgacatgctcgtcacccagttcaacatgaagtgggtg
gagcaggcgggccttgtgaagttcgacttcctcggcctgaagacgctgaccgttctgcag
aaggcgtgcgcgctgctcgaaaaggcgggcaggcccatcgacctcggtcatctgccgctc
gacgaccggcccacttacgaaatgctggcgaagggcgacacgggcggcgtgttccagctc
gaaagtacgggcatgcgggaggcgctgcgcaagctgaagccagaccgcttcggcgacatc
atcgccatggtagcgctgtatcgccccggcccgatggacaacatcgagacatacgtcaac
cgcaagcacggcattgaggtgccggactatctgcatccgctcgcgaagccgatcctcgaa
gaaacctacggcgtcatcatctatcaggaacaggtgatgcagctcgcgcaggtgctgtcg
ggctacagcctcggcgaagccgacctgctccgccgcgccatgggcaagaaaatcaaggcg
gagatggacgcgcagggcgcgcgcttcgtgaagggtgcgcttgagaaggacattccagaa
gcccgcgcgcgctacatcttcgagcttgtggcgaagttcgcaggctacggcttcaacaag
agccacgcagcggcttatgcgctgatcgcctatcagacggcctacctgaaggcgaaccac
gcgcaggaattcatcgcggcgtcgatgaccctcgacatggcgaataccgacaagctctac
gccttcacgcgtgaagcgaagcgcaatggcctcgcgatactgccgccctcggtcaacaag
tcggcggtcgagtttgagcccgagggcgacaatgccattcgctacgcccttgcagccctc
aagaatatggggcacgcagccgcagcgcatatcgtggaggcacgtggcgacaagccttat
cgcgatctcgccgacttcatgcttcgcatcaacccgaaggcgttgaacaagcgcggcatc
gagacgcttaacgcggcgggcgcattcgaggacatggagacgaaccgcgcgaaggtggcg
aagaacctcgacaggctggtggagttcggctcgaaggccgccgaggaccgcgcgcgcggt
caagaggacatgttcgggggcgggatcgcgggcagccccgcaccgcgcctcgacctcgcg
gatgcgccggaatggagcctcgtcgaaacgctcgaaaacgagcttggcgcggcgggcttc
tatctttcagggcacccgctcgacgacttcaccgaccaactcgcgcgcatgaatgtgctg
aaatggagcgacttttcggcgcgcgtgcaggcgcatggccgcgccgaatcgcgcctcgcg
gccaccgtcacctaccggcaggaccgcaaggccaagtccggcaaccgcttcgcgttcgcg
ggcttttccgatccgacggggcagttcgaggccgtcatcttctccgacacgctgaacgtc
gcgggcgacaagctcgaagcgggcaagaatgtgctcgtccatgtggagggcgaggccgac
ggcgaggcgatcaaggtgcgcgtgcaggccgttcaggcgctcgacgaggtgctcggcaag
attacgaagcaggtgtccatcaccgcgacagagcgcttgcaggtggccgaactcgtgaag
catctcgggcgcgagggcggcattcaggtcaatctcgtggtgcaaatccccgaggcgcag
aaggccgtggagttcaagcttggcgataatttttcgattaccgcgcgccagctcgccacg
ctgaagacgctgccgggcgtgttgcaggtggggtaa
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