Rhodomicrobium vannielii: Rvan_2152
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Entry
Rvan_2152 CDS
T01353
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rva
Rhodomicrobium vannielii
Pathway
rva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rvan_2152
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rva03019
]
Rvan_2152
Enzymes [BR:
rva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Rvan_2152
Messenger RNA biogenesis [BR:
rva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Rvan_2152
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ADP71377
UniProt:
E3I2L8
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All DBs
Position
complement(2350646..2351863)
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AA seq
405 aa
AA seq
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MTSVTFEALGLAKPLLRALADENYVEPTPIQEKAIPHLLQGRDLLGLAQTGTGKTAAFAL
PLLQLLSERQDSPKPRTARALILVPTRELGLQIAASFKSYGHHLKLTSTVIMGGVSIGPQ
AKALSRGVDFLVATPGRLLDHLGQGTVDLGQTSYFVIDEADRMLDMGFIRDVRKLMKVMP
RKRQSILFSATMPKEIATLAEDILKDPVHITIPAKTVAVERIDQRVHLVTTGNKPTMLAG
LLDQPEFDRVIVFTRTKRSANRVAERLLQGGVPTEAIHGNKSQAARQKALENLRQGKARV
LVATDILARGIDVDSISHVINYELPNDPENYVHRIGRTARAGSDGIAISFCDLSERASLR
NIERFLGRSLTQVNDPAPSKVVAAVARPPKVQAHRSRRPRSRSAS
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
gtgacttctgtgaccttcgaagctttggggcttgcaaagcccttgttgcgggcgctcgct
gacgaaaactacgtcgagccgacgccaattcaggaaaaggctattccccatcttctccaa
ggccgtgacttgctcggccttgcccaaaccggcacaggcaagaccgccgcatttgcgctg
cccctgctgcaactcctctccgaacggcaggacagccccaagccgcgaaccgcgcgggcg
cttatcctggttccgacgcgcgagctcgggcttcagattgccgcgagcttcaagagttac
ggccatcacctcaagctgacgagcaccgtcataatgggcggtgtctcgattggtccgcag
gcgaaagcgctgagccggggcgtcgactttcttgtcgcaacgccggggcgcctcctggac
cacctggggcaaggcaccgtcgatctcgggcagacgagctatttcgtgatcgacgaagcg
gaccggatgctcgacatgggcttcattcgcgatgttcgcaagctcatgaaggtcatgcca
aggaagagacagtcgatcctgttctcggcaacgatgcccaaggaaatcgcgacgcttgcc
gaagatatcctgaaagatcccgtgcacattaccattccggcgaaaacggttgccgttgaa
cgcatcgatcaacgcgttcacctcgtcacgactggaaacaagcctacgatgctcgctgga
ttactggatcagccggagttcgatcgcgtcatcgtgttcacccgcaccaagcgctcagcc
aatcgcgtcgcggaacgacttctgcaaggtggagttccgaccgaggccatccacggcaac
aagagccaggccgcgcggcagaaggcgcttgaaaaccttcgacaggggaaagcgcgggtg
ctcgtggcgactgatattctggcgcgcggtatcgacgtggatagcatcagtcacgtcatc
aattatgagctgccgaatgatccggaaaactatgttcatcggatcggacgaacggcgcgc
gcaggcagcgatggcatcgctatctcattctgcgacctgagcgaacgggccagcctgcgc
aatatcgagcgcttcctcggacgctcgctgacgcaagtgaacgatcctgctccgagcaag
gtggttgctgccgtcgcgagaccgccaaaggtacaagcccatcgttcgaggcggcctcgg
tcgagatcggcgagctag
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