Rhodomicrobium vannielii: Rvan_2868
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Entry
Rvan_2868 CDS
T01353
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rva
Rhodomicrobium vannielii
Brite
KEGG Orthology (KO) [BR:
rva00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rva03032
]
Rvan_2868
03400 DNA repair and recombination proteins [BR:
rva03400
]
Rvan_2868
Enzymes [BR:
rva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Rvan_2868
DNA replication proteins [BR:
rva03032
]
Prokaryotic type
DNA Topoisomerases
Rvan_2868
DNA repair and recombination proteins [BR:
rva03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Rvan_2868
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
ADP72074
UniProt:
E3HZ27
LinkDB
All DBs
Position
3123708..3126497
Genome browser
AA seq
929 aa
AA seq
DB search
MNIVIVESAAKAKTINKYLGADYKVIASYGHVRDLPAKDGSVLPDNDFEMTWEVEADSNR
IVNEIAKAVKGADRLILATDPDREGEAISWHLLKILEQKRALNGVSVERVAFNAVTKDAI
LTAMKNPRKIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVVDR
EAEIEAFRTREYWTVEAALKNGGGDAFTARLVARAGKKLDKFDIPNEALAHAYRDAIKGQ
SYRVDSVDAKDHKRNPAPPFTTSSLQQEASRKLGLSPRQTMQIAQKLYEGIDIGGETVGL
ITYMRTDGVQIVGEAIAQARGQIESQFGARYVPSAPRIYKTKAKNAQEAHEAIRPTDFGR
QPDKLRGLSAEEARLYKLIWQRAVASQMASADIERTTAEISVPGKDGVPYGVRATGSVVK
FDGFMRLYEEGRDDTDDEDSARLPPLKQGEALKDSGVTAAQHFTEPPPRYTEATLIREME
RLGIGRPSTYASTMAVLREREYVKLEKKRLVPEDKGRLVTTFLEAFFKRYVEYDFTAYLE
DRLDQISDGKLDWKALLREFWQDFIGAVTDIKDLRVTQVLDALNELLGPHIFPAKEDGGD
PRLCPLCNQGQLSLKIGKFGAFVGCSNYPECRYTRQLKTGENGNGDGAAPAGDTVLGNDP
ETGLAVCLKNGRFGPYIQLGEGGDGEKPKRASIPGGMGLADVDFAYALKLLALPREVGPH
PETQKTIMAGFGRYGPYVEHDGKYVKIDAEEVFTIGLNRAVTVIAEGGTGGKGRAPKTEP
IKVLGEHPEKGGKMEVLAGRFGPYIKWGKVNATIPKGTEPQDVTVDEAVRLIAARIEAGD
GKKGRGKPTKSAKAPAKEKKPAKAKTADAGDEAEAPKKAKTAAPKKAAANGKAKSSAKEK
SAKADEADKKPKAKASAKKTTSKAAGGTT
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgaacatcgttatcgtcgaaagcgccgcaaaggcgaaaactatcaacaagtatctgggg
gccgattacaaggtcatcgcgtcgtacggccatgtgcgagacctgcccgcgaaggacggc
tccgtcctgccggataacgacttcgaaatgacgtgggaggtggaggccgactccaaccgg
atcgtcaacgaaatcgccaaggccgtgaagggtgcggatcgcctcattctcgcaaccgac
ccggatcgcgaaggcgaagccatttcctggcacctgctgaaaattctggagcagaagcgc
gcgctgaacggcgtgtcggtggagcgcgtggcgttcaacgcggtgacgaaggacgcgatc
ctcaccgcgatgaagaacccgcgcaagatcgatgagccgctggtcgatgcctatctggcg
cgccgcgctctcgattatctcgtcggtttcaccctgtcgcccgtgctgtggcgcaagctg
cccggcgctcgctcggcggggcgcgtgcaatccgtggcgctgcgtctcgtcgttgaccgc
gaggccgaaatcgaggccttccgaacccgcgaatactggacggtcgaagcggcgctgaag
aacggcggcggcgatgcgttcacggcgcgtctcgtggcgcgggccggcaagaagctcgac
aagttcgacattccgaacgaggcgctggcgcacgcttaccgcgacgcgatcaagggccaa
tcctaccgcgtggacagcgtcgatgcgaaggaccacaagcgcaatccggcgccgccgttc
accacctcgtcgctgcaacaggaagcgtcgcgcaagctcggcctttcgccgcgccagacg
atgcagattgcgcagaagctttacgagggcatcgacattggcggcgagacggtcggtctc
attacttatatgagaacggacggcgtgcagatcgtgggcgaggcgattgcgcaggctcgc
ggccagatcgagagccagttcggcgcgcgctatgtcccgagtgcgccgcgcatctacaag
acaaaggcgaagaacgcgcaggaagcgcacgaagccatccgcccgaccgacttcggccgc
caaccggacaagctgcgcggcctctcggccgaagaggcgcggctctacaagctgatctgg
cagcgcgctgtcgcgagccagatggcgagcgccgacatcgaacgcactacggcggaaatt
tccgtgcccggcaaggacggcgtcccctatggcgtgcgggctaccggctccgtggttaag
ttcgacggcttcatgcggctctacgaggaaggccgcgacgacaccgacgacgaggattcg
gctcgccttcccccgctgaagcagggcgaggcgctgaaggattcgggcgtcaccgccgca
cagcacttcaccgagccgccgccgcgctataccgaggcgacgctcatccgcgagatggag
cggctcggcatcggccgcccgtccacctacgcgagcacgatggccgtgctccgcgagcgc
gaatatgtgaagctcgaaaagaagcggctcgtccccgaggacaaggggcggctcgtcacc
acgttccttgaggcgttcttcaagcgctacgtggaatatgacttcacggcctatctcgaa
gaccggctcgaccagatttccgacggcaagctcgactggaaggcgctgctgcgcgagttc
tggcaggacttcatcggcgcggtgacagacatcaaggatctgcgcgtgacgcaggttctc
gacgcgctgaacgaactgctcggcccgcacatcttccccgcgaaggaagacggcggcgat
ccgcggctatgcccgctctgcaatcaggggcaattgtcgctgaagatcggcaagttcggc
gcgttcgtcggctgctcgaattatcccgaatgccgctacacgcgccagctcaagaccggc
gagaacggcaatggcgacggcgccgcgccagcgggcgacactgtgctcggcaacgatccc
gagacggggcttgccgtatgcctgaagaacgggcgcttcggtccgtatatccaactcggt
gagggcggcgacggcgagaagccgaagcgcgcgtccattccgggcggcatgggtctcgcg
gatgtggacttcgcctatgcgctgaagcttttggcgctgccgcgcgaggttggcccgcat
cccgagacgcagaagaccatcatggcgggcttcggccgctacggtccctatgtcgagcat
gacggaaaatatgtgaagatcgacgcggaggaggtgttcaccatcggcctcaaccgcgcc
gtgaccgtgatcgcggaaggcggcaccggcggcaagggccgcgccccgaagaccgagccg
atcaaggttctgggcgagcacccggaaaaaggcggcaagatggaagttctcgccgggcgt
ttcggtccctatataaagtggggcaaggtcaacgcgacgatcccgaagggaaccgagcct
caagacgtgaccgttgacgaggcagtgcggctgatagcggcacgcatcgaagcgggcgac
gggaagaaggggcgcggcaaaccgacgaaatccgccaaggcccctgcgaaagagaagaag
cccgcgaaggccaagaccgccgatgcgggcgatgaggcggaagcgccgaagaaggcgaag
accgcagcaccgaaaaaggccgcagccaacggcaaggcgaaaagctccgcgaaggagaaa
tcggccaaagccgacgaggcggacaaaaagccgaaagcgaaagcatcggcgaagaagaca
acatccaaagcggcgggcgggacgacatga
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