Rhodomicrobium vannielii: Rvan_2869
Help
Entry
Rvan_2869 CDS
T01353
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rva
Rhodomicrobium vannielii
Pathway
rva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rvan_2869
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rva03019
]
Rvan_2869
03016 Transfer RNA biogenesis [BR:
rva03016
]
Rvan_2869
Enzymes [BR:
rva01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Rvan_2869
Messenger RNA biogenesis [BR:
rva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Rvan_2869
Transfer RNA biogenesis [BR:
rva03016
]
Prokaryotic type
tRNA degradation factors
Rvan_2869
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ADP72075
UniProt:
E3HZ28
LinkDB
All DBs
Position
3126494..3128845
Genome browser
AA seq
783 aa
AA seq
DB search
MSPPRQKDTMKLKEKRADVARSKTPTKDDILKFIRSSTGNIGRREIARAFDIKGSDRIDL
KRILKELAADGLIADTRRLVKKEALANVAVIVVKTQDREGDLICAPLNWNEDEDGAPPRI
LLNVTRRYEGAAIGVGDHVLARIRQTGAGADADDEGAEAAEDASGFAYLASPIKRLPRER
ARQLGILRKSGSGFVVESIDKKDLKEWPVADGEMDGAEEGELVRFETLRDSRTNRPSARV
TERIGHPKAEKAVSLIAIHNHGLRDVFGEDVLVELERLPEATMSHREDLTRVPLITIDPF
DAKDHDDAVWAAPDTDPANEGGSVVIVAIADVSFYIRPGSALDEEALLRGNSVYFPDRVV
PMLPEKLSNGLCSLRENELRPCLAVRITFDRDGKKIAQRFSRAMMRSAAKLSYQEAQAAI
DGSPNARTKPLLEPILKPLWAVYEVLKEARNRRAPLDLDLPERKIVLDERGLVLKVIIPE
RLEAHRLIEEFMIQANVAAAEALEARKSPLIYRVHDAPSSEKLVALSEFLASIGVNAGKT
SFNRPGQFNRVLTKAIGTEHEEILNEVVLRSQAQAEYRPGNIGHFGLNLRRYAHFTSPIR
RYADLVVHRALVSAFGLGEGGLSDAEKTKLDAIAENISQSERKAMSAERETVDRLIAMHL
AERVGETFKARVSGVTRFGLFVKLLDTGADGFVPMATLGRDFYKHLENLHAIVGERTGES
FRLGDRVDVKLVEANPAAGALRFDMVSDGKFSAALAKVGRKRGGGKPARAEGRKPGKGAK
GRR
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgagcccaccacgccagaaagacactatgaaactgaaagagaagcgcgccgacgtggcg
cgctcgaagacgccgaccaaagacgacattcttaaatttattcgttcctcgaccggcaat
attggccgccgcgaaatcgccagagccttcgacatcaagggctcggatcgcatcgacctc
aaacgtatcctgaaggaactggcggcggacggcctcatcgcggacacgcggcgcctcgtg
aagaaagaggcgctggcaaacgtcgccgtgattgtggtcaagacgcaggaccgcgaaggc
gacctcatctgcgcgccgcttaactggaatgaggatgaagacggcgcgccgccgcgcatt
ttgctgaacgtcacgcgccgctatgaaggcgcggctatcggcgtcggcgatcacgttctt
gcgcgcatcaggcaaacgggtgccggcgcggatgcagatgatgagggcgcggaagcggcc
gaggacgccagcggctttgcctatctcgcctcgcccatcaagcgcctgccgcgcgagcgc
gcgcgccagctcggcatattgcgcaagtcggggagcggcttcgtggtcgagtccatcgac
aagaaagacctgaaggagtggccggtcgccgatggcgagatggatggcgccgaagagggc
gaactcgtccgcttcgagacgctgcgcgactcgcgcacaaatcgcccgtccgcgcgcgta
acggagcgcatcggccatccgaaggccgaaaaggccgtcagcctcatcgcgatccacaat
cacgggcttcgcgatgtgttcggcgaggacgtgctggttgagcttgagcgcttgccggaa
gcgacgatgtcgcaccgcgaagacctcacgcgcgtgccgctcatcaccatcgatcccttc
gacgcgaaagaccacgacgacgccgtttgggccgcgcccgacaccgaccccgccaacgaa
ggtggctcggtcgtcatcgtcgccattgcggacgtctccttttatattcgccccggctcc
gcgctcgacgaagaagcgctgcttcgcggcaactcggtctatttccccgaccgcgtcgtg
ccgatgctaccggagaagctctcgaacgggctttgttcgttgcgcgagaacgagcttcgg
ccgtgcctggcggtgcgcatcaccttcgaccgcgacggcaagaagatcgctcagcgcttc
tcgcgcgcgatgatgcgctcggcggccaagctgtcatatcaagaggcgcaggcggccatt
gacggcagcccgaacgccagaaccaagccgctgcttgagccgatcctgaagccgctctgg
gctgtatacgaggtgctgaaggaagcacgcaatcgtcgcgcgccgttggacctggacttg
ccggaacgcaagattgttctcgatgagcgcgggctcgtgttgaaggtcatcattcccgag
cggctggaagcgcatcggctcatcgaggaattcatgatccaggcgaatgtcgccgccgcc
gaggcgctggaggccaggaagtcgccgctcatctatcgcgtgcacgacgcgccgtcgtcc
gaaaagctggttgcgctgagcgagtttctcgcgagcatcggcgtcaacgcgggcaagacg
agcttcaaccgccccggccagttcaatcgcgtgctgacgaaggcgatcggcacggagcac
gaggaaatcctgaacgaggtggtgctgcgctctcaggcgcaggccgagtaccgccccggc
aatatcggtcatttcggcctgaatctgcgccgctacgcgcatttcacctcgccgatccgc
cgttatgccgatcttgtcgtgcatcgcgcgctcgtcagcgcgttcggcctgggcgagggc
ggattgtccgacgccgagaagacgaagctcgacgcaatcgcggaaaacatttcgcagagc
gagcgcaaggccatgtcggccgagcgcgagacggtggaccgcctcatcgcgatgcatctg
gcagaacgcgtcggcgagacattcaaggcgcgcgtgtcgggcgtgacgcgcttcggcctg
ttcgtgaagctgctcgataccggcgcggatggcttcgtgcccatggcgacgctcggtcgc
gacttttacaagcacctcgaaaacctgcacgccatcgtcggcgagcgcacgggcgagagc
ttccgcctcggcgaccgcgtcgatgtgaaactcgtggaggcgaacccggctgcgggcgcg
ctgcggttcgacatggtgagcgatggcaagttttcagccgcgctcgcgaaggtcgggcga
aagcgcggcggcggcaagccagcgcgagccgaggggcgcaagcccggcaagggcgcgaag
ggccgccgctaa
DBGET
integrated database retrieval system
