Rhodomicrobium vannielii: Rvan_3063
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Entry
Rvan_3063 CDS
T01353
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rva
Rhodomicrobium vannielii
Pathway
rva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rvan_3063
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rva03019
]
Rvan_3063
03009 Ribosome biogenesis [BR:
rva03009
]
Rvan_3063
Enzymes [BR:
rva01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Rvan_3063
Messenger RNA biogenesis [BR:
rva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Rvan_3063
Ribosome biogenesis [BR:
rva03009
]
Prokaryotic type
rRNA processing factors
Rvan_3063
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
Motif
Other DBs
NCBI-ProteinID:
ADP72266
UniProt:
E3I0E8
LinkDB
All DBs
Position
complement(3335910..3339059)
Genome browser
AA seq
1049 aa
AA seq
DB search
MANKMLIDATHPEETRVVVTRGNRVEEFDYESASRKQLRGNIYLAKVARIEPSLQAAFVN
YGGNRHGFLAFAEIHPDYYQIPVAVREQLMKEEAADRQGRYRDAGESRPNRRSSDKAPEA
EGGTQTSNESGNGESQPDVAAAAGEAPSEDVRAEFAAAVDAAPTDQADAGETAPEEKTAG
EPGNGGAIALDAVLPPTLYEEFTAAISRGEEARDEIPSHPDDVEGGPDSEDDEADEDDDE
LEDEDSDDDADEEDDDDEVEDAADKQPRAKHRSRDDDAGDDDSGSASDDGGIISVPESAT
PAPVEVVGSEDALEELPQRHKRRWRHYKIQEVIKRNQIVLIQVVKEERGSKGAALTTYLS
LAGRYTVLMPNTASGGGISRKITVPADRKRLKEIAQELDVPEGMGLIIRTAGASRTKAEI
KRDFEYLLRLWENVRDLTLKSTAPCLVYEEGDLIKRSIRDLYNKDIDEILVAGDEAHHEA
REFMRMLMPSHAKNVLLYKEPEPIFTKYEVERQLNQMFSPVVTLKSGGYIVLNQTEALVA
IDVNSGRSTREYSIEDTALKTNMEAAEEVARQVRLRDLAGLIVIDFIDMDERRNNRSVER
KLKESLRHDRARIQVGHISHFGLMEMSRQRLRQGVVEVSTVPCPVCQGVGHIRSIESVAL
MILRSIEDHLRTQGAANITLTASTEAALYILNNKRSYLRDIELRYGVTIVLQPDDKAHGA
HFVLERGAEAVPPVVGDSRVVHMETASLAQADEEEEAEPASSPAAAATAEGEGEKRTSRR
KRRRRRGRGDAAADAPLPNGHTVSMAEGSDDDDDDDDDTDGADEGVTEAGAQAVAAVNGE
DRRESAEERQDGQFRRNRRRGRRGGRRHRDDFAGQPGEIPGLGEQPEIDFEHGLPVVQSP
AAEAVTAEAHADTAPQLEQSVEVAPVEASVAVEAEPKPVQAVGEDATADVASSDPVQSEA
VAELAAEVASEPAAEAEAKPEALAAEADAPQSPNADVAEAVEAKPDEPAEEQVKVEAEIA
ILPPPAPEPKPKPVRTGPPKKGWWQRSVS
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacaagatgttaatcgatgccacccacccggaagagacacgggtggtggtgacg
cgtggcaatcgcgtcgaggaatttgactacgagtccgcgtcgcggaagcagcttcgaggc
aacatctatctggccaaggttgctcgcatcgagccctcgcttcaagcggcgttcgtgaac
tacggcggcaatcgccacggctttcttgccttcgccgaaatccacccggattattaccag
atcccggttgccgttcgcgaacagctgatgaaagaagaggcggcggaccgacagggtcgt
taccgcgacgcgggcgaaagccgtccgaatcgcagatcctccgacaaagcgccggaagcc
gaaggcggcacgcaaacatccaacgagtctggcaacggcgagagccagcctgatgtcgca
gcagccgctggcgaagctccgagcgaggacgttcgggctgaattcgccgctgcggtcgac
gccgcgcctacggatcaggccgacgccggcgaaaccgcgcccgaagaaaaaaccgcaggc
gaacccggcaatggcggggcgatcgcgctcgacgccgtgcttccgcccacgctttatgaa
gagttcacggccgccatctcgcgcggcgaggaagctcgcgacgaaattccgagccatccc
gacgacgtggaaggcggccccgattcagaagatgacgaggctgacgaggacgacgacgag
cttgaggacgaagattcggacgacgacgccgacgaagaggacgatgacgacgaagtcgag
gacgcggccgacaagcagccgagggcgaagcatcgctctcgcgatgacgacgcaggcgat
gatgacagcgggtcggcttcggacgacggcggcatcatttccgtgccggaaagcgccacg
cccgcgccggtcgaggtcgtcggttccgaggacgcgctcgaagaactgccgcagcgtcac
aagcgccggtggcgtcactacaagattcaggaagttatcaagcgcaaccagatcgttctg
atccaggttgtgaaggaagagcgcggctcgaagggcgcggcgctgacgacttacctctcg
ctcgcgggccgctacaccgtgctgatgccgaacacggccagcggcggcggcatctcgcgc
aagatcaccgttccggcagaccgcaagcgcctgaaggaaatcgcgcaggaactcgatgtg
ccggaaggcatgggcctcatcatccgcacggcgggtgcatcgcgcaccaaggccgaaatc
aagcgcgacttcgaatatctgctgcgcctgtgggaaaatgtccgcgatctcacgctgaag
agcaccgcgccctgcctcgtctacgaggaaggcgacctcatcaagcgctcgatccgcgac
ctctacaacaaggacatcgacgaaattcttgtcgcgggcgacgaagcgcaccacgaggcg
agagaattcatgcgcatgctcatgccgagccatgcgaagaacgtgctgctctacaaggaa
cctgagccgatcttcaccaagtatgaggtcgagcgtcagttgaaccagatgttcagcccg
gtggtcacgctgaagtccggcggctatatcgtgctgaaccagaccgaagcgctcgtcgcc
atcgacgtgaactccgggcggtcgacgcgcgaatactccatcgaagacaccgcgctgaag
acgaacatggaagcagccgaggaagttgcgcggcaggtacgcctgcgcgacctcgcgggc
ctcatcgtcatcgacttcatcgacatggacgagcggcgcaacaaccgttcggtggaacgc
aagcttaaggaaagcctgcgccacgaccgcgcccgcatccaggttggccatatcagccat
ttcggcctcatggagatgtcgcgccaacggctgcgtcagggcgttgtcgaggtgtcgact
gtgccgtgcccggtctgccagggcgtcgggcacatccggtcgatcgagtccgtggcgctt
atgatcctgcgttcgattgaggaccatctgcggacgcaaggagcggccaacatcaccttg
accgcgtcgacggaagccgcgctgtacatcctcaacaacaagcgctcctatctccgcgat
atcgaactccgctacggcgtgacgatcgttcttcaaccggacgacaaggcgcacggcgcg
catttcgtgctcgaacgcggcgccgaagcggtgccgccggtcgtgggcgactcgcgcgtg
gttcacatggaaaccgcgtcgctggcgcaggcggacgaggaagaggaagccgaaccggcg
tcctcccccgccgcagctgctactgctgaaggcgaaggcgagaagcggacatcccgccgc
aagcgccgccgtcggcgcggtcggggcgacgccgccgccgatgcgccgcttccgaacggt
catacggtctcgatggcggaaggctccgacgacgacgatgacgacgatgatgatacggac
ggtgccgacgagggcgtgacggaggccggggcgcaagccgtagcagccgtcaatggcgag
gatcgccgggagagcgccgaggaacgtcaggacggccagttccgtcgtaacaggcgcaga
ggccgtcgcggtggcaggcgtcatcgcgacgattttgcgggccagcccggtgagatcccc
gggcttggagagcagcctgagatcgacttcgagcatgggcttccggtcgtgcagtcgcca
gcggctgaggccgtgacggcggaagcgcacgccgatacggcgccgcagctggagcaatcc
gtagaagtcgcgcccgtcgaagcctcggtggcggtcgaagccgagccgaagcccgttcag
gccgtcggcgaggatgcgacggccgacgtcgcttccagcgatccggtccagtccgaagcg
gtcgccgaacttgcggcagaggttgcgagcgaacccgcagccgaggcggaggccaagccg
gaggcgctagcagccgaagcagacgcaccgcagtcgccaaacgcagatgtggcggaagcc
gttgaggcgaaaccggacgaaccggcggaagagcaggtcaaggttgaagccgagatcgca
atccttccgcctcccgcgccggaacccaagcccaagccggtgcgtactggtccgccgaaa
aagggttggtggcagcgcagcgtcagctag
DBGET
integrated database retrieval system
