Rhodomicrobium vannielii: Rvan_3107
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Entry
Rvan_3107 CDS
T01353
Name
(GenBank) 6-phosphogluconate dehydratase
KO
K01690
phosphogluconate dehydratase [EC:
4.2.1.12
]
Organism
rva
Rhodomicrobium vannielii
Pathway
rva00030
Pentose phosphate pathway
rva01100
Metabolic pathways
rva01120
Microbial metabolism in diverse environments
rva01200
Carbon metabolism
Module
rva_M00008
Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate
Brite
KEGG Orthology (KO) [BR:
rva00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00030 Pentose phosphate pathway
Rvan_3107
Enzymes [BR:
rva01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.12 phosphogluconate dehydratase
Rvan_3107
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Ortholog
Paralog
GFIT
Motif
Pfam:
ILVD_EDD_N
ILV_EDD_C
DUF6400
Motif
Other DBs
NCBI-ProteinID:
ADP72309
UniProt:
E3I0Y6
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All DBs
Position
3383289..3385118
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AA seq
609 aa
AA seq
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MSIHSTVGEVTERIVKRSHDNRARYLDRIAQAAERRPERTHLGCANQAHGFAACGPIDKE
RLREGRTPNLGIVTAYNDMLSAHQPYERFPPLIREAAREAGATAQVAGGTPAMCDGITQG
FEGMDLSLFSRDVIALSTAVALSHQTFDATVMLGICDKIVPGLFIGAASFGHLPTVFIPS
GPMTSGLPNPEKSRIRQLYAEGKVGRDELLAAEAECYHAPGTCTFYGTANTNQMVMEMMG
VHIPGASFVNANTPLRDALTREGVRRALAMTALGNEYTPFGAMVDERSFVNAIAGVLATG
GSTNHTLHLLAMSSAMGITLTWDDFDALSPVVPLVAHVYPSGAADVNQFAAAGGLPFVIR
ELLAAGLLHGDIKTVWGTTLDAYAIEPGLDAEGQLVWRDAAEKSGDEKILRSVDQPFSVE
GGIRVLDGNLGRAVMKTSALAPERLAIEGPARIFHSQEALQDAFKAGALTGDFVAVVRFQ
GPKANGMPELHKLLPPLGVLQDRGQRVALLTDGRMSGASGKVPSAIHVTPEAVAGGPIAR
IRDGDIIRIDAVSGTLAALVGEKEWAAREPATADLSASHEGVGRELFAPFRAAVGEADTG
ATVFFRSAA
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtgtccatccattccaccgtcggcgaagtcaccgaacgcatcgtcaagcgcagccacgac
aaccgcgcgcgctatctcgaccgcatcgctcaagccgccgagcgcaggcccgagcgcacg
catctcggttgcgcgaatcaggcgcacggcttcgcggcatgcggcccgatcgacaaggag
cggctgcgcgaaggccgcacgccgaacctcggcatcgtgacggcctataacgacatgctg
tcggcgcatcagccctatgagcgctttccgccgctgatccgcgaggcggcgcgcgaggcg
ggagctacggcgcaggtcgctggcggcacgcccgccatgtgcgacggcatcacgcaaggc
ttcgagggcatggacctcagcctgttctcgcgcgatgtcatcgcgctttcaacggcggtc
gcgctctcgcaccagaccttcgacgcgaccgtgatgctcggcatctgcgacaagatcgtg
ccggggctgttcatcggcgcggcgtcgttcgggcatctgccgaccgtgttcataccgtcc
gggccgatgacgtcaggcctgccgaacccggagaagtcgcgcatccgccagctttacgcg
gagggcaaagtcggccgcgacgagcttcttgcggccgaagccgaatgctatcacgcgccc
ggcacctgcaccttctacggcacggccaacacgaaccagatggtcatggaaatgatgggc
gtgcacattcccggcgcgtccttcgtaaatgccaacacgccgcttcgggatgcgctcacc
cgcgaaggcgtgcgccgcgcgctcgccatgacggcgctcggcaatgaatacacacccttc
ggcgcgatggtggacgagcgctccttcgtgaacgccatcgcaggcgtgctcgccacaggc
ggctcgacgaaccacacgctgcaccttctcgccatgtcgtcggcgatgggcatcacgctg
acctgggacgatttcgacgcgctgtcgccggtagtgccgctggtcgcgcatgtctatccg
agcggagccgcggacgtgaaccagttcgcggcggcaggcggcctgccgttcgtcatccgc
gagcttctggcggctggcctgctccacggcgacatcaagaccgtgtggggcacaacgctc
gacgcctacgccatcgagccgggtctcgacgccgagggccagcttgtctggcgcgacgcg
gcggagaagagcggcgacgaaaagatcctgcgcagcgtggaccagccgttcagcgtggaa
ggcggcatccgcgtgctcgacggcaatcttggccgcgcggtaatgaaaacctcggcgctg
gcacccgaacgcctcgcgatcgaaggtccggcgcgcatcttccactcgcaggaggcattg
caggacgctttcaaggcgggcgcgctgacgggcgatttcgtcgcggtggtgcgcttccag
gggccgaaggcgaacggcatgccggagttgcacaagctcctgccgccgctcggcgtgctt
caggatcgcggccagcgcgtggcgcttctcaccgacgggcgcatgtcgggcgcatccggc
aaggtgccgtcggcgattcatgtcacaccggaggctgtggcgggtggccccatcgcgcga
atccgcgacggtgatataatacggatcgatgccgtgtctggcacgctggcggcgctggtc
ggcgagaaggaatgggcggcgcgcgaaccagcaaccgccgatctttccgcgtcgcatgaa
ggcgtcggccgcgaactgttcgcgccgttccgtgcggctgtgggcgaggctgacacggga
gcaacagtctttttcaggagcgccgcatga
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