Rahnella victoriana: J9880_00495
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Entry
J9880_00495 CDS
T07871
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rvc
Rahnella victoriana
Pathway
rvc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rvc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J9880_00495 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rvc03400
]
J9880_00495 (mfd)
Enzymes [BR:
rvc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J9880_00495 (mfd)
DNA repair and recombination proteins [BR:
rvc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J9880_00495 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
DUF6007
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UHM90892
LinkDB
All DBs
Position
86205..89648
Genome browser
AA seq
1147 aa
AA seq
DB search
MSQDYRYSLPERPGDTRLLGQLTGSACALECAQISERHTGPVLLVAPDMQNALRLRDEIQ
QFTDNKVLSISDWETLPYDSFSPHQEIISSRLSSLYQLPTMERGIIILPVNTLMQRVCPH
EFLHGHALVMKKGQQLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEEPY
RIDFFDDEIDSLRIFDVDTQRTLTEVDHINLLPAHEFPTDKNAIELFRSQWREKFEVRRD
AEHVYQQVSKGTFPAGIEYWQPLFFSQPLTTLFSYLPENTLVLNTGDLEAAAERFWQDAC
QRYESRRVDPMRPLLEPENLWLRVDSLYSELKAWPRVQLRTDSLPKKAANTNLSYEKLPD
LSVQPQNKTPMDNLRRFNEAFTGSLVFSVESEGRRETLQDLLARIKLMPTLITRIEEADT
AGRYIMIGACERGFLDADKQLALICESDLLGERVARRRQDSRRSINTDTLIRNLAELRPG
QPVVHVEHGVGRYLGLTTLETGGITAEYLILTYAGEDKLYVPVSSLHLISRYAGGADESA
PLHKLGGEAWSKARQKAAEKVRDVAAELLDIYAQREAKSGFAFKHDKEQYQLFCQAFPFE
TTPDQSQAINAVLTDMTQPLAMDRLVCGDVGFGKTEVAMRAAFLAVSNNKQVAVLVPTTL
LAQQHFDNFRDRFASWPVRIEMMSRFRSAKEQNAVLEDAVEGKVDIIIGTHKLLQSDLRW
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRMAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIEKASQRLAELVPEARIAI
GHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAYLLTPPPKAMSADAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EGQSGQMTSIGFSLYMELLENAVEALKEGREPSLEDLTTSQTEVEMRMPALLPEDFIPDV
NTRLSLYKRIASAKTEGELDELRVELIDRFGTLPDGARNLLQIAVLRLKAKDLGIKRIEG
NERGGFIEFGDKNRVDPGFLIGLLQKQPQVYRLDGPAKLKFMLDLTDRPKRLKFVGDMLS
EFTEHLI
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaagattatcgttattcgttgcctgaacgtccgggtgacacccgcctgttaggc
cagctcaccggctccgcctgcgcgctggaatgtgctcaaatcagtgaacgccataccggt
ccggttctgctggttgcgcctgatatgcaaaatgccctgcgcctgcgcgatgaaattcaa
cagtttactgacaacaaagtcctgagtatttcggactgggaaacgctgccgtacgacagt
ttttcgccgcatcaggaaatcatttcatcccgtctgtccagtttgtatcagcttcctacg
atggaacgcggcattatcattctgccggtgaatacgctgatgcagcgcgtctgcccgcat
gagttcctgcacggccacgcgctggtaatgaaaaaaggccagcaactgtcgcgcgataaa
ctgcgtgcacagctggaacaggccggttaccgcagcgtcgatcaggtgatggagcacggt
gagtttgccacccgtggcgccctgctcgatttgtacccgatgggcagcgaagaaccttac
cgcattgatttctttgatgatgaaatcgacagcctgcgcatttttgatgtggatacccag
cgcacgctgaccgaagtggatcacatcaatctgctgcccgcccatgaattcccgaccgac
aaaaatgccattgagctgtttcgcagccagtggcgcgaaaagtttgaagtgcgccgcgac
gccgaacacgtttatcagcaggtcagcaaaggcaccttcccggccggtatcgaatactgg
caaccgctgtttttcagtcagccgctgaccacgctgttcagttatctgccggagaatacg
ctggtgctgaacaccggcgatctggaagccgccgccgagcgtttctggcaggatgcctgc
cagcgttatgaaagccgccgcgtcgatccgatgcgtccgctgcttgagccggaaaacctg
tggctgcgggtcgattcactgtacagcgagctgaaagcctggccgcgcgtgcaactgcgc
accgattcgctgccgaagaaagccgcgaacaccaatctgagctacgaaaagctgccggac
ctctccgttcagccgcagaacaaaacgccgatggataacctgcgccgcttcaatgaagct
tttacaggcagtctggtgttctcggtagaaagtgaaggccgacgcgaaacacttcaggat
ttgctggcccgcatcaagctgatgccgacgctgattacccgcattgaagaagccgacacc
gccggtcgttacatcatgattggcgcgtgcgaacgcggttttctcgatgcggataaacaa
ctggcgctgatctgcgaaagcgatctgctgggtgagcgcgtggcgcgccgccgtcaggac
agccgccgctcgattaataccgatacgctgatccgcaatctggcggaactgcgtcccggc
cagccggtggtgcatgtcgaacacggcgtcggccgttatctcgggctgaccacgctggaa
accggcggcatcaccgccgaatacctgatcctgacttacgccggtgaagacaaactgtac
gtgccggtctcgtcgctgcatctgatcagccgctatgccggtggcgcagacgaaagcgcg
ccgctgcataaactcggcggtgaagcctggtcgaaagcgcggcagaaagccgccgagaaa
gtccgtgatgtggccgccgaactgctggatatttacgcccagcgcgaagccaaaagcggt
ttcgccttcaaacacgataaagaacagtatcagctgttctgtcaggctttcccgtttgaa
accacaccggatcagtcacaggccattaatgccgtgctgaccgacatgacgcaaccgctg
gcgatggaccgtctggtgtgtggcgacgtcggtttcgggaaaaccgaagtggcgatgcgc
gcggctttcctcgccgtgtccaacaacaagcaggttgccgtgctggtcccgaccacctta
ctggcgcaacagcactttgataacttccgtgaccgcttcgccagctggccggtgcgcatc
gaaatgatgtcgcgtttccgcagtgccaaagagcaaaacgccgtgctggaagacgcggtg
gaaggcaaagtcgatattattatcggtacgcacaaactgctgcaaagcgacctgcgatgg
aaagatctcggcttgctgattgtcgatgaagagcaccgtttcggcgtacgtcacaaagaa
cgtattaaggcaatgcgcgccgatgtcgacattctgaccctgaccgcgacgccgatcccg
cgtacgctgaacatggcgatgagcggcatgcgcgacctgtcgattatcgccaccccgccc
gcgcgccgtatggcggtcaaaacctttgtgcgcgagtacgacagcctggtggtgcgcgag
gcgatcctgcgtgaaattctgcgcggcgggcaggtttattatctttataacgatgtcgag
aatatcgagaaagcctcgcagcggctggcggaactggtaccggaagcgcgcatcgctatc
ggtcacggccagatgcgtgaacgcgacctcgagcgggtgatgaacgatttccaccatcag
cgtttcaacgtgctggtgtgtaccaccatcatcgaaaccggtatcgatatcccgacggcg
aataccatcattatcgagcgggccgatcactttggtctggcgcagttgcatcagttgcgt
ggccgcgtcgggcgttcgcaccatcaggcgtatgcctatctgctgacaccgccgccgaag
gccatgtctgccgatgcccacaagcgtctggaagccatcgcctcactggaagatctgggt
gccggttttgcgctggcgacgcacgatctggaaatccgtggcgcgggtgaactgctcggt
gaaggccagagcggccagatgaccagcatcggtttctcgctgtatatggaactgctggaa
aacgccgtcgaagccctgaaggaaggccgcgaaccgtcgctggaagacttaaccaccagc
cagacggaagtcgaaatgcgcatgcctgccctgttgccggaagatttcattcctgacgtg
aatacgcgcttgtcgttgtataagcgtatcgccagtgcgaaaaccgaaggcgaactggat
gaactgcgcgtcgagctgattgaccgtttcggcaccctgccggacggtgcgcgtaatctg
ttgcagattgccgtgctgcgcctgaaagctaaagatctgggcatcaaacgcattgaaggt
aacgagcgcggcggattcattgagtttggcgataagaatcgcgtcgatccgggcttcctg
attggtctgttgcaaaaacagccgcaggtctaccgtctcgatggcccggctaaactgaag
tttatgctggatctgactgaccgcccgaagcgcctgaaattcgtcggcgatatgctgagt
gagtttactgagcatctgatctga
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