Rahnella victoriana: J9880_00640
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Entry
J9880_00640 CDS
T07871
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rvc
Rahnella victoriana
Pathway
rvc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rvc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J9880_00640 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvc03019
]
J9880_00640 (rne)
03009 Ribosome biogenesis [BR:
rvc03009
]
J9880_00640 (rne)
Enzymes [BR:
rvc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
J9880_00640 (rne)
Messenger RNA biogenesis [BR:
rvc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J9880_00640 (rne)
Ribosome biogenesis [BR:
rvc03009
]
Prokaryotic type
rRNA processing factors
J9880_00640 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
UHM90919
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All DBs
Position
117044..120343
Genome browser
AA seq
1099 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPANYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSAEAL
QWDLTFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLA
KEHIAALGRPDFSSKIKPYVGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESTHHICPRCAGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQ
TPHYHVLRVRKGEEISALSYLLPQIHEAEMLQPSEELPAERRRPEQPALAAFALQSEAPP
SSFEEPAVADEPVKTRTTTVNAPAAPVAEKSGFVSRLLSGLKSLFAPEPQQEVKPVEAPK
ETQEATETDNRRNNERRNQRRQGGRRDRNGERGERNDRGNRGEGRENNRDNRGESRDNRE
NNREQRDDQRRNRRNQEPVVTETRSEEVETASREEQQQQPRRERSRRRSEDKRKPQTEEK
IQDVAVVEQVAAPVADETEQEDRQPAQRRQRRQLSQKIRFESEEVDHEAEAAAQLLITGT
RPAAVAVAIAEQEPSDAEATNIADSDENQNDNARENGMPRRSRRSPRHLRVSGQRRRRYR
DERYPTQSPMPLAGAFVSPEMASGKVWITYPVAQSSEQQVAETETAEVLTEQVDIAQANT
PVMAEIAEVAQQPAAEPAKVVEAAPQETPAETAPVDAEQPVADEPVLVEPETAEPVEETP
VVHVAPEAHEPAVVEPTPVIAEQEVQEPAPVAAPEVNVEQPAEPVAEVKAAETAPVVEAA
PVVDAPAVVTETAVVAPRFKHHATAPMTKAPAPAYVQEPARQSDWVRPDFNFDGKGSAGG
HAAVTTATAPATKPEMPAE
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcgactcagcaagaagagttgcgcgttgcccttgtagat
ggacagcggctgtatgatttggatattgaaagtccgggccatgagcagaaaaaagcgaac
atttacaaaggtaaaatcacccgcattgaacccagtctggaagcggcattcgtagattac
ggcgcggaacgacatggtttcctccctctgaaagaaatttcccgcgaatatttccctgcc
aattattcttctcatggccgcccgaacatcaaagatgtcttgcgcgaaggtcaggaagtc
attgttcaggtagataaagaagagcgtggaaataaaggcgcagcactgacgacgtttatc
agtctggccggtagttatctggttctgatgccaaacaatccacgcgctgggggaatttcc
cgccgtattgaaggcgacgaccgcacagaactgaaagaagcattgtcttccctgcaactg
cctgacggcatgggtctgattgtgcgtactgccggtgtcggcaaatctgccgaagccctg
cagtgggacctgactttccgcctcaaacattgggatgcgatcaagaaagccgctgaaggc
cgccctgctccgttcctgatccaccaggaaagtaacgttatcgttcgcgccttccgtgac
tatctgcgtccggacatcggcgaaatcctgatcgataacccgaaaatcctcgacctggca
aaagaacatatcgccgcgttgggccgtcctgacttcagcagcaaaattaagccctacgtc
ggcgaaattccgctgttcagccattaccagatcgaatcgcagattgaatccgctttccag
cgtgaagtccgcctgccgtctggtggctcgattgttatcgacagcaccgaagcactgacc
gctatcgacatcaactccgcacgcgccacccgcggcggcgatatcgaagaaaccgcgttc
aacaccaaccttgaagccgcagacgaaattgcccgtcagttacgcctgcgtgacctcggt
ggcctgattgttatcgacttcatcgacatgacccccgttcgccaccagcgcgaagtggaa
aatcgtctgcgtgatgccgttcgccaggaccgtgcccgtattcaaatcggtcgcatttcc
cgtttcggtttactggaaatgtcccgtcagcgcctcagcccgtcactgggtgaatctacg
caccatatctgcccgcgttgtgcaggtacaggtaccgtccgtgacaacgaatccctgtca
ctgtcgattctgcgtctgattgaagaagaagcgctgaaagaaaacaccaaagaagtgcat
gctatcgttccggtgcctatcgcttcttacctgctgaacgaaaaacgtgaatcggtgaat
gccatcgaaaaacgccagggcggtgtacgtgcagtgatcgtgcctaacgatcagatgcaa
actccgcactaccacgttctgcgtgtgcgtaaaggcgaagaaatctctgcactcagctat
ctgcttccgcagatccatgaagctgagatgctgcaaccttctgaagaattgccggctgag
cgtcgtcgtcctgagcaaccggctctggctgcgtttgctctgcaaagcgaagccccaccg
tcaagcttcgaagaacctgccgttgccgacgagccagtaaaaacacgcaccaccacagtc
aatgctccggcagcccctgtggcagagaaatcaggtttcgtcagccgtctgctgagtggc
cttaaaagcttgttcgcaccggagccacagcaggaagtgaaacctgttgaagcgccgaaa
gagactcaggaagcgacagaaacggataaccgtcgtaataacgaacgccgtaaccaacgc
cgtcagggcggacgtcgtgatcgcaacggtgaacgtggcgaacgcaacgatcgcggcaac
cgtggcgaaggccgtgagaataatcgtgataatcgtggtgaaagccgtgataaccgcgaa
aataatcgcgaacagcgtgatgatcagcgtcgtaaccgtcgcaatcaggaacctgttgtg
actgaaacccgtagcgaagaagttgaaactgcctctcgtgaagagcagcagcaacaacct
cgtcgtgaacgttcacgtcgccgttctgaagacaaacgtaaaccacagactgaagagaag
attcaggacgtggccgtcgttgaacaagtggcagcgccagttgccgatgaaacggaacag
gaagatcgccagccggctcaacgccgtcagcgccgtcagttatcgcagaaaatccgcttc
gagtcagaagaagtcgatcacgaagcagaagcggctgcgcagctgctgatcaccggcacc
cgccctgcagctgtggcagttgccatcgcagagcaggaaccgtctgatgcagaagcgaca
aacattgccgatagcgatgaaaatcagaatgacaacgcccgtgaaaatggtatgccacgt
cgttcacgccgttcgccgcgccatttgcgtgtgagcggtcagcgtcgtcgccgttatcgt
gatgagcgttacccgacacagtctccgatgcctcttgccggtgcgtttgtttctccggaa
atggcatcaggcaaagtctggatcacctatccggttgctcagtcttctgaacaacaggtt
gctgaaactgagacggctgaagtgctgactgagcaggttgatattgctcaggcaaatacg
ccggtaatggcagaaattgcagaagtggcacaacaacccgccgcagaacctgcgaaggtc
gttgaagccgcgccacaagagacgccagccgaaaccgcaccggttgatgcagagcagcct
gtagccgatgaaccggttctggttgagcctgaaaccgctgaacctgttgaagaaactcct
gtggttcacgttgcgccagaagcacacgagcctgcagtggtggaaccaaccccggttatc
gctgaacaagaagttcaggaacctgcgccagttgccgcgcctgaagtgaacgttgaacag
ccagcagaacctgtcgctgaagtgaaagcggcagaaactgcgccggtcgtggaagcggca
cctgttgtcgacgctccggcagttgtgactgaaactgcagtggttgcgccacgcttcaaa
catcacgcaaccgcgccgatgaccaaagcgccagcgccagcttatgtgcaggaacctgcg
cgtcaaagtgactgggtccgtccagacttcaactttgatggtaaaggttcagcaggcggc
catgcagccgttaccactgcgacagcaccggcgaccaaacctgagatgccagcagaataa
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