Rahnella victoriana: J9880_05540
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Entry
J9880_05540 CDS
T07871
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
rvc
Rahnella victoriana
Brite
KEGG Orthology (KO) [BR:
rvc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvc03019
]
J9880_05540 (csrD)
Messenger RNA biogenesis [BR:
rvc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
J9880_05540 (csrD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
Motif
Other DBs
NCBI-ProteinID:
UHM91819
LinkDB
All DBs
Position
complement(1193015..1194949)
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AA seq
644 aa
AA seq
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MRFTTRLSALMTMLVALAMLLMLLGVTFSFIYLNKQDTEQHLQALATTYDQALLTHTPAE
ARRWMPQAMRMLDITDIDVKLDNATIYEYHERPDLHRSWDSVMPEYDTAIIPLMQNHAMT
LHISYVDPVSSYIRSLRSTFTIGLAILAMLAMLLLSFRWLRKETDGVEKLEDRAVRILRG
EREGLTGDVGEWPHSASSAIDRLLGDLNEAREQRSRVDTLIRAYAQQDAQTGLSNRLFFD
NQLATQLEEKGAHGVLMLLRLPDFDTMRETHGQTIVEELRSAMVNLLSTFVMRHVDALLA
RYFHSDFAVLLPHRTLKEAEVMAGQLVNALGVLPTSSLIDREALMYIGISAYRFGQTPDQ
VMDMAEQATRHAAFQGSNSWFIYDKNVPEKGRGSVRWRTLLENTLARGGPRLYQKPAFTR
DHKQDHREIQRRVFDGEQELLAAEFIPLVVQFGLSQSFDRVMLSQIIPLLNRWPDETLAF
HLTVDSLLQRSFVRWLRDTLLQCERTQRNRILIELAEADLCQHTDRLRPAIRLLQGLGCR
LAVSQAGLTVVSTSYLKTFPVERVKLHPGLVRDIDKRVENQLFVQSLLSACEGTQALVFA
SGVRTKEEWAVLLKSGIHGGQGDFFAGPEPVEPVGKKYSHNRDV
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgcgatttactaccagactctcggcactgatgacgatgttagtcgcgctggcaatgtta
ctgatgttgctcggcgtcactttcagctttatctacctgaacaaacaagatactgaacaa
catcttcaggcacttgccacgacctatgatcaggcattgctgacccatacgcctgccgaa
gcccggcgctggatgccgcaggcgatgcgcatgctcgacatcacggatatcgacgtcaaa
ctcgataacgccaccatttatgaataccacgagcgtccggatttacaccgttcgtgggac
agcgtgatgccggaatatgacaccgccattatcccgctgatgcaaaaccacgccatgacg
ctgcatatttcctatgtcgatccggtcagcagctatatccgctccctgcgttctaccttc
acgattggtctcgccattctggccatgctcgccatgctgctgctcagtttccgttggctg
agaaaagaaacggacggcgtggaaaaactggaagaccgtgcagtgcggattttgcgcggt
gaacgtgaaggtttaaccggcgatgtgggcgaatggccgcattctgccagcagcgcgatc
gaccgtctgctgggggatctgaatgaagcgcgcgaacagcgcagccgggtggataccctg
atccgcgcgtacgcccagcaggatgcccaaaccggactgagcaaccgcctgttctttgat
aatcagctggcgacgcaactggaagaaaagggcgcgcacggcgtgctgatgttattacgc
ctgcctgattttgacaccatgcgcgaaacgcacggtcagacgatcgtcgaggaactgcgt
tctgcgatggtcaatctgttatccacctttgtcatgcgtcatgttgatgccttgctggcg
cgctatttccacagtgattttgccgtgctgttaccccaccgcacattaaaagaagcggaa
gtgatggccggtcagctggtcaatgcgcttggtgttttgcccacgtcttcgctgatcgac
cgtgaagctctgatgtacatcgggatcagtgcttatcgttttggccagacgccggatcag
gtgatggacatggcggaacaggccacgcggcatgcggctttccagggcagcaacagctgg
tttatctacgacaaaaatgtgccggaaaaaggccgcggcagtgtgcgctggcggaccttg
ctggaaaatacgctggcgcgcggcggcccgcgcctttatcagaaaccggccttcacccgc
gatcacaaacaagatcaccgtgagatccagcgacgcgtcttcgacggtgagcaggagctg
ctggccgccgagtttattccgctggtggtgcagttcggcttatcgcaaagtttcgaccgg
gtgatgttaagtcagattattccgttacttaaccgctggccggacgaaacgttggcattt
cacctgacggttgattcattattgcagcgctcatttgtacgctggttacgcgataccttg
ctgcaatgcgaaagaactcaacgaaatcgaatattgattgaacttgcagaggcggatctc
tgtcaacataccgaccggctgcgtcctgcgatcagattgctgcagggtttaggctgtcgt
ctggcggtttcacaggccggactgacggtggtcagcacctcttatctgaaaactttcccg
gtggagagagtcaaacttcaccccggcttagtgcgcgatattgataaaagggtagagaat
caactttttgtccaaagcctgctcagtgcatgcgaagggactcaggcgctggtatttgcc
tccggcgtgcggacaaaagaggagtgggccgtcctgctgaaaagcgggatccacggcggt
cagggcgatttctttgccggtccggagcctgttgaaccggtcggtaaaaaatattcacac
aaccgcgatgtttaa
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