Rahnella victoriana: J9880_06145
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Entry
J9880_06145 CDS
T07871
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rvc
Rahnella victoriana
Pathway
rvc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rvc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J9880_06145 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rvc03021
]
J9880_06145 (rpoC)
03400 DNA repair and recombination proteins [BR:
rvc03400
]
J9880_06145 (rpoC)
Enzymes [BR:
rvc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J9880_06145 (rpoC)
Transcription machinery [BR:
rvc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J9880_06145 (rpoC)
DNA repair and recombination proteins [BR:
rvc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J9880_06145 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UHM91928
LinkDB
All DBs
Position
complement(1324111..1328331)
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLEKRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEEIKNTEGEVTHKTSIIDTTVGRAILWMIVPKGLPFSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPAKKAEIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGVVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDILKPGTADILVPRNTLLHEKTCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNTGTIKL
SNHKHVSNSNGKLVITSRNTELKLIDEFGRTKESYKVPYGSVMGKGDGASVNGGETVANW
DPHTMPVISEVSGFIRFADMVDTQTITRQTDDLTGLSSLVVLDSAERTGSGKDLRPALKI
VDAKGDDVLIPGTDMPAQYFLPGKAIVQLEDGTQIHSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVSAGGTDFLEGEQAEMSRVKIANRKLEAEGKITATFSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRARRKAQGEVPV
VPQVSADEATANLAELLNAGFGNSDD
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttactaaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgctctggcatcgccagacatgatccgttcttggtcttttggtgaagttaagaag
ccagaaaccattaactaccgtacgttcaaaccagaacgtgacggccttttctgtgcccgt
attttcggaccagtaaaagactacgaatgcctgtgcggtaagtacaagcgtttaaaacat
cgcggcgtgatctgcgagaagtgcggcgttgaagtgacccagactaaagtacgccgtgag
cgtatgggccacatcgaactggcttccccgactgcacacatctggttcctgaaatcgctg
ccatcgcgcatcggtttgctgctggatatgccactgcgtgacatcgaacgtgttctgtac
ttcgaatcctatgtggttatcgaaggcggcatgactaacctcgaaaaacgccagatcctg
actgaagagcagtatctggatgcgttggaagagtttggtgatgagttcgacgcgaagatg
ggtgcggaagctattcaggccctgttgaaaaacatggatctggaagcagagtgcgagcaa
ctgcgtgaagagttgaacgaaaccaactccgaaaccaaacgtaagaagctgaccaagcgt
atcaagctgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgact
gtgctgccggtactgccaccagacttgcgtccattggttccgttggacggcggccgtttc
gcaacgtcggatctgaacgatctgtatcgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgcctgctggatctggctgcgccagacatcatcgtacgtaacgaaaaacgtatgctgcaa
gaagcggtagatgctttgctggataacggccgtcgcggtcgtgctatcaccggctctaac
aagcgtccgctgaaatctctggcagacatgattaaaggtaaacagggtcgtttccgtcag
aacttgctgggtaaacgtgtcgactactctggtcgttccgttatcaccgtaggtccatac
ctgcgtctgcaccagtgtggtctgccgaagaaaatggcactggaactgttcaaaccgttc
atctacggcaagctggaactgcgtggcctggccaccaccatcaaagccgcgaagaaaatg
gttgagcgcgaagaagctgtcgtttgggacatcctggacgaagttatccgcgaacacccg
gtattgctgaaccgtgcaccaaccctgcaccgtttgggtatccaggcgtttgaaccggtt
ctgatcgaaggtaaagcaatccagctgcacccgctggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgttgacgctggaagcccagctggaagcg
cgtgcgttgatgatgtctaccaacaacatcctgtcacctgcgaacggcgagccaatcatc
gttccttctcaggacgttgtattgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggttctgaccggtcctaaagaagctgagcgtatttaccgcgccggt
ttggcctctctgcatgcgcgtgtcaaagtgcgtattacagaagagatcaaaaataccgaa
ggcgaagttacgcacaagacgtcgattatcgacacgactgttggtcgcgccatcctttgg
atgatcgtacctaaaggtctgccgttctctatcgtcaaccagcctctgggcaaaaaagct
atctccaaaatgctgaacacctgttaccgcattttgggcctgaagccgaccgttattttt
gctgaccagatcatgtacaccggttttgcttacgcagcccgttcaggcgcgtcagtaggt
atcgatgacatggtaatccctgcgaagaaagcagagatcatcgaagaagcagaaaccgaa
gttgctgaaatccaggaacagttccagtctggtctggtcactgctggcgaacgctataac
aaagtgatcgacatctgggctgcggccaacgaacgtgttgctaaggcaatgatggaaaac
ttgtctgttgaagacgtcgtcaaccgtgacggtgttgttgaacagcaggtttcattcaac
agtatctttatgatggccgactccggtgcgcgtggttctgctgcacagattcgtcagctg
gccggtatgcgtggcctgatggcgaaaccagatggttccatcattgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctctactcacggtgctcgt
aaaggtttggcggataccgcacttaaaacggctaactccggttatctgacccgtcgtctg
gttgacgtcgcgcaggatctggttgtgaccgaagacgactgtgggactcacgaaggcatc
atgatgactccggtcatcgaaggtggcgacgttaaagaaccactgcgtgagcgtgtactg
ggtcgtgtgactgcagaagatatcctcaagccgggtacggcggatatcctggttccacgt
aacaccctgcttcacgagaagacgtgtgatctgttagaagagaactcagtcgacagcgtg
aaagtacgttcagtcgtaagttgcgaaaccgactttggtgtgtgtgcaaactgctacggt
cgcgacctggcacgtggtcacatcatcaacaaaggtgaagcgatcggtgttattgcagca
cagtccatcggtgagccgggtacccagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagcggaatccagcatccaggttaagaacactggtaccattaaactg
agcaaccacaagcacgttagcaactctaacggcaaactggtgatcacttcccgtaacact
gagctgaaattgatcgacgaattcggtcgtaccaaagaaagctataaagtgccttacggt
tccgtgatgggcaaaggtgatggcgcatctgttaacggcggcgaaaccgttgctaactgg
gatccgcacaccatgccagttatcagtgaagtgagtggtttcattcgctttgccgatatg
gtggatactcagaccatcacacgccagaccgacgacctgaccggtttgtcttctctggtt
gttctggactctgcagagcgtaccggtagcggtaaagatctgcgtccggcactgaaaatc
gttgacgctaaaggcgacgacgtattgatcccaggtactgatatgcctgctcaatacttc
ctgccaggtaaagcgattgttcagctggaagatggtactcagatccactctggtgacacc
ctggcgcgtattcctcaggaatccggcggtaccaaggacatcactggtggtctgccacgc
gttgctgacctgttcgaagcacgtcgtccgaaagagcctgcaatccttgctgaaatcagc
gggatcatctccttcggtaaagaaaccaaaggcaaacgtcgtctggtaatttctccgtta
gatggcagcgatgcttacgaagaaatgatccctaaatggcgtcagctgaacgtgttcgaa
ggcgaagttgtggaacgtggtgacgtcgtatccgacggccctgagtctccgcacgacatc
ttgcgtttacgtggtgttcacgcggttacccgctacatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataagcacatcgaagttatcgttcgtcagatg
ttgcgtaaaggcaccatcgttagcgccggtggcactgacttcctggaaggcgagcaggca
gaaatgtctcgcgttaaaatcgctaaccgtaagctggaagctgaaggcaaaatcacggca
acattcagccgtgacctgctcggtatcaccaaggcatccctggcgaccgaatccttcatc
tctgctgcgtcgttccaggaaaccacgcgtgttcttaccgaagcggctgttgccggtaaa
cgtgatgaactgcgtggcctgaaagagaacgttatcgttggccgtctgatcccagccggt
accggttacgcttatcaccaggatcgtgcacgccgtaaagcacaaggcgaagtgccagtt
gtaccgcaagtcagcgcggatgaagcaacggctaacctggctgaactgctgaacgcaggt
ttcggtaacagcgacgattaa
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integrated database retrieval system
