Rahnella victoriana: J9880_06270
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Entry
J9880_06270 CDS
T07871
Symbol
fadB
Name
(GenBank) fatty acid oxidation complex subunit alpha FadB
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
rvc
Rahnella victoriana
Pathway
rvc00071
Fatty acid degradation
rvc00280
Valine, leucine and isoleucine degradation
rvc00310
Lysine degradation
rvc00362
Benzoate degradation
rvc00380
Tryptophan metabolism
rvc00410
beta-Alanine metabolism
rvc00640
Propanoate metabolism
rvc00650
Butanoate metabolism
rvc00907
Pinene, camphor and geraniol degradation
rvc00930
Caprolactam degradation
rvc01100
Metabolic pathways
rvc01110
Biosynthesis of secondary metabolites
rvc01120
Microbial metabolism in diverse environments
rvc01200
Carbon metabolism
rvc01212
Fatty acid metabolism
Module
rvc_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
rvc00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
J9880_06270 (fadB)
00650 Butanoate metabolism
J9880_06270 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
J9880_06270 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
J9880_06270 (fadB)
00310 Lysine degradation
J9880_06270 (fadB)
00380 Tryptophan metabolism
J9880_06270 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
J9880_06270 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
J9880_06270 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
J9880_06270 (fadB)
00930 Caprolactam degradation
J9880_06270 (fadB)
Enzymes [BR:
rvc01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
J9880_06270 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
J9880_06270 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
J9880_06270 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
J9880_06270 (fadB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
B12-binding_2
Motif
Other DBs
NCBI-ProteinID:
UHM91944
LinkDB
All DBs
Position
1352397..1354589
Genome browser
AA seq
730 aa
AA seq
DB search
MLYQGETLHLHWLDGGIAELVFDAPGSVNKLDTQTVASLGEAIAVLEKQSELKGLLLSSA
KPAFIVGADITEFLSLFNAPAEKLHEWLDFANSIFNRLEDLPVPTLSAISGYALGGGCEC
VLATDFRISTADARIGLPETSLGIMPGFGGSVRLPRLIGTDSALEIIAAGKNISGKEALK
IGLVDAVVDADKLRDAGITMLKNAVDGKLDWHNRRDPKRLPLKLSQIEAAMSFSVAKSMV
MQNAGKHYPAPMTAVKTIEAAARLGRDEALQLETASFVPLAQSKEARALVSIFLNDQFVK
GKAKKLAHGSDKPTQAAVLGAGIMGGGIAYQSALKGVPVVMKDINDQSLTLGMNEAAKLL
NKQLERGKLDGMKMAKVLSTIHPTLDYSGIERASVVVEAVVENPKVKAAVLAEAESLLDA
DTVLASNTSTIPIDQLASSLKRPENFCGMHFFNPVHRMPLVEIVRGEKTSDKTISRIVSY
ALTMGKTPVVVNDCPGFFVNRVLFPYFSGFSLLLRDGADFRQIDKVMEKQFGWPMGPAYL
LDVVGIDTAHHAQAVMAAGFPDRMARDYRDAVDVLFDNRRFGQKNQLGFYRYSEDSKGKP
RKDVDEQAISLLADNLKPAHADFSPQDIIARMMIPMINEVVRCFEEGIIASPAEADMALV
YGIGFPPFHGGPFRYLDTLGTAEYLKMTEQYAHLGPMYQAPAGLRAKAQTNESYYPVAAP
LENFSTGNQA
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgctctaccaaggcgaaacattacacctgcactggctcgacggcggtatcgcggagctg
gtgtttgatgctccaggctcggtcaacaaactcgacacccaaacggtcgccagcctgggc
gaagcgattgccgtacttgaaaagcagtctgagctgaaaggcttgctgctgagttcggcc
aagccggcgttcatcgttggcgcggatatcactgaattcctttctttattcaacgcaccc
gcagaaaaattgcatgagtggctggacttcgccaacagcatttttaaccgtctggaagac
ctgccggtgccgacactgtctgccatcagcggttatgcgctgggcggcggttgtgaatgt
gtgctggcgaccgattttcgcatcagcaccgccgatgcccgcattggcttgccggaaacc
agcttaggcattatgccgggcttcggcggctcggtacgcctgccgcgtctgatcggcacc
gacagtgcgctggaaattatcgccgccggtaaaaatatcagcgggaaagaggccctgaaa
atcgggctggtggatgccgttgtagatgccgacaaactgcgcgatgccggtattaccatg
ctgaaaaacgccgtcgacggaaaactggactggcataaccgccgtgatccgaaacgtctg
ccgctgaaactcagccagattgaagcggcgatgagcttcagcgttgccaaaagcatggtc
atgcaaaatgccggtaaacattatccggcgccaatgactgccgtgaaaaccattgaagcg
gcggcgcgtcttggccgtgatgaagccctgcaactggaaaccgccagttttgtgcctctc
gcgcaatccaaagaagcccgcgcgctggtcagcattttcctcaacgatcagtttgtgaaa
ggcaaagccaaaaaactggctcacggcagtgataaaccgacacaggctgcggtactgggc
gcagggattatgggcggcgggatcgcctatcagtcggcgctgaaaggcgtgccggtggtg
atgaaagacatcaacgaccagtcgctgacgctcggcatgaacgaagcggccaaattactg
aacaaacaactcgaacgcggcaaactcgacggcatgaagatggctaaagtgctgtccacc
attcatccgacgctggattacagcggcattgaacgcgccagcgtagtcgttgaagccgtg
gtagagaatccaaaagtcaaagctgccgttctggcggaagcggaatcgctgctcgatgcc
gataccgtgctggcgtcgaatacctcgaccattcccatcgatcagctggcctcctcgctg
aagcgtccggaaaacttctgcggcatgcacttcttcaacccggttcaccggatgccgctg
gtggagatcgtccgtggcgaaaaaacttcagacaaaacgatttcacgcatcgtctcctac
gcgctgaccatggggaaaacgccggtcgtcgtcaatgactgcccgggcttcttcgttaac
cgcgtgctgttcccgtatttctccggtttcagcctgttactgcgtgacggtgccgatttc
cgccagatagacaaagtgatggaaaaacagttcggctggccgatgggcccggcgtatctg
ctggatgtggtcggtatcgacaccgcgcaccacgcacaagcggtgatggccgccggtttc
cctgaccgtatggcgcgggattaccgtgatgccgtcgatgtgctgtttgataaccgtcgt
ttcggccagaagaatcagctcggtttttaccgctacagtgaagacagcaaaggcaagccg
cgtaaggacgtcgatgaacaggcgatcagcctgctggccgacaacctgaaaccggcacac
gcggatttctcaccgcaggacatcatcgcccgcatgatgatcccgatgattaacgaagtg
gtgcgctgttttgaggaaggcattattgccagcccggcggaagccgacatggcgctggtg
tacggcatcggtttccctccgttccacggcggtccgttccgttatctcgataccctcggc
accgccgaatatctgaaaatgaccgaacagtacgcccatctggggccgatgtatcaggca
ccggccgggttacgcgccaaagcgcaaaccaatgaaagttattatccggttgcggctccg
ctggaaaacttcagcaccggtaatcaggcataa
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