Rahnella victoriana: J9880_09950
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Entry
J9880_09950 CDS
T07871
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rvc
Rahnella victoriana
Pathway
rvc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rvc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J9880_09950 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvc03019
]
J9880_09950 (rnr)
03016 Transfer RNA biogenesis [BR:
rvc03016
]
J9880_09950 (rnr)
Enzymes [BR:
rvc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
J9880_09950 (rnr)
Messenger RNA biogenesis [BR:
rvc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J9880_09950 (rnr)
Transfer RNA biogenesis [BR:
rvc03016
]
Prokaryotic type
tRNA degradation factors
J9880_09950 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
WHD_RNase_R
S1
Rho_RNA_bind
LexA_DNA_bind
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
UHM92622
LinkDB
All DBs
Position
2145516..2148014
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AA seq
832 aa
AA seq
DB search
MSQDPFLEREAEKYESPIPSREFILEHLAKRETPASREEIGNELNLSGEEALEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRLEGVKKDDVYLSAEQMKMCI
HGDVVLAQPVGTDRKGRREARIVRVLVPKTSQIVGRYFTDAGAGFVVPDDSRLSFDILIP
SDAINGARMGYMVVVELTQRPTRRTKAVGKIVEVLGDKMGTSMAVDIALRTHEIPHVWPP
QVLKQVEDLSEQVPEEAKKGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAI
ADVSYYVRHGTALDDEARSRATSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTI
SAQGKLTSSKFYEAVMSSHARLTYNKVWRIIEGDPELREQYSPLVKHLLELHTMYKMLDQ
ARAERGGIAFETEEAKFIFNAERRIERVEPTVRNDAHKLIEECMILANIAAARFVEKHNE
PALFRVHDRPSDDHISALKSVLGELGLVMGGGMKPEPKDYAQIMDELADRPDREMLQTML
LRSMKQAIYDPENRGHFGLALPSYGHFTSPIRRYPDLALHRAIKYLLAKEHGTLKDRWTP
TGGWHSDYEDMLQLGEHCSMAERRADEATRNVADWLKCDFMQDHVGEVFTGIIASVTGFG
FFVRLNDLFIDGLVHVSSLDNDYYRYDNIGQRLVGESSGAVYRLGDTVEIRVEAVHMDER
KIDFALVSSTRKARGEGKTARDRAKKGGERSMRSTAPANAGRRRTGKKNVNFEPDSAFRK
DDAKPAKPKKEKAAGAVGKDGKPKKAKKPSDKTAKIAAATKAKRAKKKSAES
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccattcctggaacgagaagcagaaaaatacgaatcacctattcccagc
cgtgaattcattctggaacacctcgcgaaacgtgaaacacctgccagccgagaagaaatc
ggtaacgaactgaacctgtccggtgaagaagcactggaagcgctgcgccgccgtctgcgc
gccatggaacgcgacggtcagttagtgttcacccgccgccagtgttatgcgctgccggag
cgtctggacttactgaaaggcacggttatcggccatcgtgatggctacggtttcctgcgc
ctcgaaggcgtcaagaaagacgatgtgtatctttctgctgaacaaatgaaaatgtgcatc
cacggtgacgtggtactggcacagccggtcggtaccgaccgcaaaggccgccgcgaagcg
cgcattgtgcgtgtgctggtgccgaaaaccagccagattgttggccgttacttcaccgat
gccggcgccggttttgtggtgccggacgacagccgtctgagctttgacatcctgatcccc
tccgacgccattaacggcgcgcgcatgggctatatggttgtcgttgaactgacccagcgc
ccgacccgccgcaccaaagcggtcggtaaaatcgttgaagtgctcggcgataaaatgggc
accagcatggcggtagatatcgccctgcgtacccatgaaatcccgcacgtctggccgcca
caggtgctgaagcaggtcgaagacctgagcgagcaggtgccggaagaagcgaaaaaaggc
cgtgtcgatttacgcagcctgccgctggtcaccattgacggtgaagacgcccgcgacttc
gatgacgccgtgtattgcgagaaaaaacgcggcggtggctggcgcctgtgggtggcgatt
gccgacgtcagttattacgtccgtcacggcaccgcgctggatgacgaagcacgaagccgt
gcaacgtcagtttacttcccgtcgcaggttgtcccgatgctgccggaagtgctgtcgaat
ggtctgtgttccctgaacccgcaggtagaccgcctgtgtatggtctgtgagatgactatc
tctgcgcagggcaagctgaccagctctaaattctacgaagccgtgatgagctctcacgcg
cgtctgacgtacaacaaagtctggcgcatcatcgaaggcgatccggaactgcgcgagcag
tattccccgctggtgaagcatttgcttgaactgcacaccatgtacaaaatgctggatcag
gcgcgtgccgaacgtggcggtatcgcgttcgaaaccgaagaagcgaaattcatcttcaac
gctgaacgccgtatcgaacgtgtcgaaccgacggtgcgtaacgatgcccacaaactgatt
gaagagtgcatgatcctggcgaacatcgcggcggcacgttttgttgagaaacataacgaa
ccggcgctgttccgcgtgcatgaccgtccaagcgatgaccacatctctgcgctgaaaagc
gtgctgggtgaactgggtctggtgatgggcggcggcatgaagcctgagccaaaagattat
gcgcagatcatggatgaactggccgatcgtcctgaccgcgaaatgctgcaaacgatgttg
ctgcgttcgatgaaacaggcgatttacgatccggaaaaccgcggccactttggtctggcg
ttaccgtcgtacggtcacttcacttcgccaatccgtcgttatccggatctggcgctgcac
cgtgcgatcaagtatctgctggcgaaagagcacggcacgctgaaagatcgctggacgcca
accggcggctggcacagtgattacgaagacatgttgcagctcggcgagcattgttcgatg
gcagaacgccgtgcggatgaagccacccgtaacgtcgctgactggctgaagtgtgacttc
atgcaggatcacgtgggcgaagtctttaccggcattatcgccagtgttaccggctttggc
ttcttcgtgcgtctcaacgatttgttcatcgacgggctggtgcatgtgtcctcgctcgac
aatgattattaccgttacgacaatatcggccagcgtctggtcggtgagtcctccggtgcg
gtgtaccgcctgggcgatacggtagaaattcgtgttgaagccgtgcacatggacgaacgt
aaaatcgatttcgcgctggtgtccagcacccgcaaagcgcgtggtgaaggcaaaaccgca
cgcgaccgcgccaaaaaaggtggcgagcgttccatgcgttcaacggcaccggccaacgcg
ggtcgccgtcgtaccggtaagaaaaacgtgaacttcgagccggacagtgccttccgcaaa
gacgacgcgaaaccggctaagccgaagaaagaaaaagcggctggcgcagtgggtaaggac
ggcaagccgaagaaagccaaaaagccttctgataaaacagccaaaattgctgcggccacc
aaagccaaacgtgcgaagaaaaagtcagccgaaagctaa
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