Rahnella victoriana: J9880_10230
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Entry
J9880_10230 CDS
T07871
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rvc
Rahnella victoriana
Pathway
rvc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rvc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J9880_10230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvc03019
]
J9880_10230
03009 Ribosome biogenesis [BR:
rvc03009
]
J9880_10230
Enzymes [BR:
rvc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J9880_10230
Messenger RNA biogenesis [BR:
rvc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J9880_10230
Ribosome biogenesis [BR:
rvc03009
]
Prokaryotic type
rRNA helicases
J9880_10230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
Cas3-like_C_2
UTP25_NTPase-like
AAA_19
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UHM92675
LinkDB
All DBs
Position
2204828..2206750
Genome browser
AA seq
640 aa
AA seq
DB search
MTTELETSFADLGLSAPIISALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAA
FSLPLLHNIDASLKAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQL
RALRQGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPA
EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGLRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDIL
IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
IERTMKLTIPEVEIPTAEVLGERRLAKFAAKVQQQLESSDLDQYRALLAKLQPAEELDVE
TLAAALLKMAQGERPLIVAADPVFKSRPPRREFEDRGDRGDRGDRRDRPARSNDRPARDG
DSPRRERRDAGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIEL
PKGMPGEILSHFTRTRILNKPMNMQLIGDAVPQAPRRDRPAGAGGERRGNGAPRPFNGER
REGGRGNGAPRSFSGDRREGSSAAGDRRPPSRAPRRTSDA
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgactactgagcttgaaacctcttttgctgacctggggctgtctgctccgatcatttct
gccctgactgatttgggctacgaaaaaccttcaccaatccaggctgagtgtattcctcac
ctgttaaatggccgcgacgttctgggtatggctcagactggttccggtaaaacagctgca
ttctccttaccgctgctgcacaacattgatgcttcactgaaagcaccacaaattcttgtt
ctggcaccgacccgcgaactggcggttcaggttgctgaagcaatgactgatttctctaaa
cacatgcatggcgtgaatgtggttgccctttacggcggccagcgctatgacgtccagttg
cgcgcactgcgtcagggaccacaagttgttgtgggtacaccgggccgtctgctggaccac
ctgaaacgcggcaccctgaacctctctaacctgagcggtctggtgctggacgaagccgat
gaaatgctgcgtatgggcttcatcgaagacgtcgaaactatcatggcgcagatcccggct
gaacatcagaccgcgttgttctctgcaaccatgccagaagctatccgtcgcattacccgt
cgcttcatgaaagagcctcaggaagtgcgcatccagtcaagcgtgacaacccgtcctgac
atcagccagagctactggtctgtgtacggcctgcgtaaaaacgaagcgctggtacgtttc
ctggaagcagaagattttgatgcggcgattatcttcgttcgtaccaaaaacgcgaccctg
gaagtggctgaagccctggaacgtagcggctacagcagcgctgcactgaacggtgacatg
aaccaggcgctgcgtgagcagactctggaacgtctgaaagatggccgtctggacattctg
atcgcaaccgacgtggcagcacgtggtcttgacgtagaacgtatcagcctggttgttaac
tacgacattccgatggactcagaatcttacgttcaccgtatcggtcgtaccggtcgtgct
ggccgtgcaggtcgcgcattactgttcgttgagaaccgtgaacgtcgtctgctgcgtaac
attgaacgcaccatgaagctgaccattccggaagttgaaatcccaactgcagaagttctg
ggcgaacgtcgtctggctaagtttgcagcgaaagttcagcaacaactggaaagcagtgat
ctggatcagtaccgtgcgctgctggcgaaactgcaacctgcagaagagctggatgtggaa
acactggctgcggcactgctgaaaatggcacagggcgaacgtcctctgatcgttgcagcg
gatccggtcttcaaaagccgtccaccacgtcgtgaatttgaagaccgtggcgaccgcggt
gatcgtggcgatcgtcgtgaccgtccggctcgcagcaatgaccgtcctgcacgtgatggc
gacagccctcgtcgtgagcgtcgtgacgctggcgaaatggaactgtatcgcatcgaagtg
ggtcgtgatgatggtgttgaagttcgtcacatcgttggcgctatcgctaacgaaggcgac
atcagcagccgttacatcggtaacatcaagctgttcggtacgcactctactatcgaactg
ccgaaaggtatgccgggcgagatcctgtctcacttcacccgtacgcgtatcctgaacaaa
ccgatgaacatgcagctgatcggtgatgcggtgccacaagctccacgtcgtgatcgtccg
gccggtgctgggggtgagcgtcgtggtaacggtgctccgcgtccattcaacggtgaacgt
cgtgaaggtggccgtggtaacggtgctccacgttctttcagcggtgatcgtcgtgaaggt
tcttcagctgctggcgaccgtcgtccgccaagccgcgcaccacgtcgtacttctgacgca
taa
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