Rahnella victoriana: J9880_10425
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Entry
J9880_10425 CDS
T07871
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
rvc
Rahnella victoriana
Pathway
rvc02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
rvc00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
J9880_10425 (pdeR)
Enzymes [BR:
rvc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
J9880_10425 (pdeR)
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GFIT
Motif
Pfam:
EAL
GGDEF
PAS
PAS_9
PAS_4
Motif
Other DBs
NCBI-ProteinID:
UHM92709
LinkDB
All DBs
Position
complement(2248864..2250882)
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AA seq
672 aa
AA seq
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MVDSQDASILYLHFGTPRPYWRLGSDSNALELSAEKGVVNVAIPLTQWQAGKIRQLTGIT
SSFTLDITLFGSPVRLYLVGRKIDSKAWAGTASAYQDTESVAHDLEVGLTFAEQVVSEAN
SVIVIIDQEGKIHRFNRLSEEYTGLREEDVIGRSAYDLFMSMEEGLASRQNINGFFQHQQ
SYEVERWINTVKGQRLFLFRNKFVHSGSGKQQKYLICSGSDITDERKAQERLRVLANTDL
VTGFANRNALQESLAKALLERGESKVGLIYLDLDNFKKVNDAYGHMFGDHLLRAVSDAIQ
DCLSPNDKLARLGGDEFIILSLHADLSTLEELSRRVLRRLSLPFRIGLIEVYTGCSGGIA
ICPEHGTDGDTLLQNADTAMYVAKEKGKNAHCVFSPGMNEKASEYMWLDTHLRKALVEKD
QLVLHYQPKVSLYGTVQSVEALLRWNSPERGLIQPQSFIPYAEESGLITPIGKWVIETAT
RQATEWQKKGLNLRVAVNLSGRQLNNGSFITTLSEAMKKAGMKGCLLDFELTESCLVEDE
GSAVSMINQLHKLGAQVHLDDFGTGYSSLSQLARIPLDCIKLDQSFIRGINDNPVSQALV
RAIVAVAKTLQLTVVAEGVETAEEEKLIDEIGVDSKQGFLYAKPMPAAELEHWLEEKSVA
SPNVFKHKAKQK
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggtcgactctcaagatgcctccatcttgtacctgcattttggtacaccccgcccttat
tggcgactgggttcagacagcaatgccctggagttatccgcagagaaaggcgtcgtcaat
gttgctatccccctgacgcagtggcaggccgggaaaatccgccaactgaccggcattacc
tccagttttaccctggatatcaccttattcggttctcccgttcgcctgtaccttgtcggg
cgaaaaatcgacagcaaagcctgggcgggtaccgcatctgcgtatcaggatacggaatcg
gtcgcgcacgatcttgaagtcggcctgaccttcgcggaacaggtagtttccgaagccaat
tccgtgatcgtgattatcgatcaggagggcaaaatccaccgttttaaccgcctgagcgaa
gaatataccggcctgcgtgaagaagatgtcatcgggcgcagcgcctatgacttattcatg
tcgatggaagaagggctggcctcgcgtcagaacatcaatggtttttttcagcatcagcaa
tcttatgaagttgagcgttggatcaacaccgtcaaaggccagcggctgtttctgtttcgc
aataaattcgtgcacagcggcagcggaaaacagcaaaaatacctgatctgctcgggttct
gatattaccgacgagcgcaaggcgcaggaacgtttacgcgtactggcgaacaccgatctg
gtcaccggttttgctaaccgtaatgccttacaggaatcgctggcgaaagccttacttgaa
cgcggcgaaagcaaggtcggcctgatctatctcgatctggataacttcaaaaaggtgaac
gacgcctacggccatatgtttggcgatcacctgctgcgcgcggtctccgatgccattcag
gattgtctgtcgccgaacgataaactggcgcgactgggcggcgatgaattcattattctt
agcctccacgctgatctcagcacgctggaagaactcagccggcgggtgctgcgcaggctg
agcctgccgtttcgtatcggactgattgaagtctataccggctgttccggcggtatcgcc
atttgcccggaacacggcaccgacggcgatacgctgttgcagaatgccgataccgccatg
tatgtggcaaaggaaaaaggcaaaaacgcccactgcgttttttcgccgggcatgaacgag
aaagcctcggaatacatgtggttagatacccatctgcgtaaggcgctggtggagaaagat
cagctggtgttgcactatcagccgaaagtctcgctgtacggcacagtgcaaagtgtcgaa
gcattgctgcgctggaattcgccggaacgcggcctcattcagccacaaagttttattccc
tatgcggaagaatccggtctgatcacgccgatcggcaaatgggtgattgaaaccgccacc
cgtcaggcaacggaatggcagaagaaagggctgaacctgcgtgttgcagtgaatctttcc
gggcggcagctcaataacggatcctttatcaccacgctgtcggaagcgatgaaaaaagcc
ggtatgaaaggctgtctgctggattttgagctgacggaaagttgtctggtggaagatgaa
ggttccgcagtcagcatgatcaatcagctgcataaacttggcgcgcaggtgcatctggat
gatttcggcaccggttattcctcgttgtcgcaactggcgcgcatccccctcgactgcatc
aagctggatcaaagttttattcgcggcatcaatgacaatccggtgtctcaggcgctggtg
cgggcgatcgtggccgtggcaaaaaccctgcaactgaccgtggtggcggaaggggtggaa
acggcggaagaagagaaactgattgacgaaattggtgtggacagcaaacagggatttctt
tacgccaagccaatgcccgcggctgagctggagcactggcttgaggaaaaaagtgttgct
tcacccaatgtgtttaaacataaagcaaaacagaaatag
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