Rahnella victoriana: J9880_12020
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Entry
J9880_12020 CDS
T07871
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rvc
Rahnella victoriana
Pathway
rvc03030
DNA replication
rvc03430
Mismatch repair
rvc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rvc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J9880_12020 (dnaE)
03430 Mismatch repair
J9880_12020 (dnaE)
03440 Homologous recombination
J9880_12020 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rvc03032
]
J9880_12020 (dnaE)
03400 DNA repair and recombination proteins [BR:
rvc03400
]
J9880_12020 (dnaE)
Enzymes [BR:
rvc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
J9880_12020 (dnaE)
DNA replication proteins [BR:
rvc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
J9880_12020 (dnaE)
DNA repair and recombination proteins [BR:
rvc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
J9880_12020 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
DUF2610
Motif
Other DBs
NCBI-ProteinID:
UHM89069
LinkDB
All DBs
Position
2594085..2597567
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFIHLRVHSDYSMVDGLAKVGPLVKCAASLGMPALAITDFTNLCGLVKFYGAAHGA
GIKPIIGADLNVQSEILGDELAQLTVLAMNNQGYQNLTLLISRAYQRGYGAAGPIVDLDW
LAELNEGLILLSGARMGDVGKFLTRGNDLQVSQCLDFYQQYFPDRYYLELIRTGRAEEEN
YLHAAVALATERGLPVVATNDVRFMVPTDFDAHEIRVAIHDGFTLDDPKRPRNYTSQQYM
RSEDEMCELFEDVPEALQNSVEIAKRCNVTIRLGEYFLPQFPTGDMTTEDFLVEKSKIGL
EERLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNSVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDRVIDHVSE
MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LPEIYEADEEVKSLIDMARQLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKSGEAPLDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDSFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGGADMLRRAMGKKNPVEM
AKQRGGFEDGAKSRGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIKG
VGEGPIEAIIEARNEGGYFKELFDLCARADVKKLNKRILEKLIMSGAFDRLGPHRAALMS
SLSDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEKSYSNVMPWPEQTVLDGERETLGLY
LTGHPITQYLKEIERYGGGQRLKDMHPTERGKMTVAVGLVLAARVMVTKRGNRIGICTLD
DRSGRLEVMLFTEALEKFQHLLEKDRILIATGQVSFDDFSGGLKMMARDVMDISEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRENARARLRFGASWRVTPTD
KLLLDLRGLVGTEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggccgaacctcgttttattcatctgcgtgtacatagcgactattccatggtggatggg
ctcgccaaagtcggcccgctggtgaaatgcgcagcgtcgctcggcatgcctgctctggcg
attaccgattttaccaacctctgtggtctggtgaaattttacggcgcggcgcacggtgca
ggcattaagccgatcattggtgctgacctgaatgtgcaaagtgaaattctcggtgatgag
ctggctcaactgactgttctggcgatgaacaatcagggttatcagaacctgacgctgttg
atttcacgcgcctatcagcgtggctacggcgcggccgggccgattgttgacctcgactgg
ctggcagaactcaatgaagggctgatcctgctttccggcgcaagaatgggcgatgtcggt
aagtttctgacccgtggcaatgatttacaggtcagtcagtgtctcgacttctaccagcag
tatttccccgatcgttattatctcgaactgatccgtaccggccgtgcggaagaagaaaac
tatctgcatgccgcagtcgcgctggcgactgaacgcggtctgccggtggtggcaaccaat
gacgtgcgctttatggtgccgaccgattttgacgcccatgagatccgtgttgcgatccac
gacggcttcacgctggatgatcctaagcgtccgcgcaattacacctcacagcaatatatg
cgcagcgaagatgagatgtgtgagctgtttgaggatgtaccggaagcgctgcaaaacagc
gtggaaatcgccaaacgctgtaacgtcactatccgtctcggcgagtatttcctgccgcaa
ttcccgaccggtgacatgaccaccgaagattttctggtggagaaatcaaaaatcggcctg
gaagagcgtctggaatttctgttccctgatccggaagttcgcgcacaacgacgtcctgag
tatgacgagcgtctggatatcgaactgaaagtgatcaaccagatgggtttccccggctac
ttcctgatcgtcatggagttcatccagtggtcgaaagataacagtgtaccggtggggccg
gggcgtgggtccggtgcgggttctctggtggcgtatgccctgaaaattaccgatctggat
ccgctcgaatttgacctgctgttcgaacgtttccttaaccccgaacgtgtttccatgccc
gactttgacgtcgacttttgcatggaaaaacgcgaccgggtgatcgatcacgtttcagaa
atgtatggccgtgaagccgtttcgcagatcatcacgtttggtaccatggcagccaaagcg
gttatccgcgatgtgggccgcgttctgggccatccgtatggtttcgttgaccgtatttcc
aaactggtgccgcctgatccggggatgacgctggagaaagcgtttgccgctgagccgcag
ttgccggaaatctatgaggctgacgaagaagttaagtcgctgatcgacatggcgcgtcag
ctggaaggcgtcacccgtaacgccggtaaacacgccgggggggtggtgatcgcaccgacg
aaaattaccgacttcgcaccgctgtattgcgatgctgaaggcaaccatccggttacccag
ttcgataaaaatgacgtggaatacgctgggctggtcaagttcgacttcctcggtctgcga
acattgaccatcatcgactgggcgctggaaatgatcaacgcccgtcgtgcaaaatccggc
gaagccccgctggatatcgctgccattccgctggatgacaaaaaaagcttcgacatgctg
caacgctcggaaaccacggcggtgttccagcttgaatcccgcggcatgaaagatttgatc
aagcgtctgaagcccgacagcttcgaagatatgatcgcactggtggcgctgttccgtccg
gggccgttgcagtcaggcatggtagataactttatcgaccgtaaacacggccgcgaagag
atttcctatccggatattcagtggcagcatgaatccctgaaacctgttctggagccgacc
tacggcatcatcctgtatcaggaacaggtcatgcagatcgcgcaggtcctggcgggttat
tcgctgggtggcgcggacatgttgcgtcgtgcaatgggtaagaaaaacccggtagaaatg
gccaagcagcgcggcggttttgaagacggtgcgaaatcacgcggcattgacggcgaactg
gcgattaaaatcttcgatctggtagagaaatttgcgggttacggttttaacaaatcccac
tccgcagcctatgctttagtgtcgtatcagacgctgtggctgaaagcgcactatccggcg
gagttcatggcagcggtaatgaccgccgatatggataacaccgagaaagtggtcgggctg
gtggatgaatgctggcgtatggggctgaaaatcctgccgcctgatatcaacagcggtctg
taccatttccacgtgaacgacgaaggtgaaatcgtttacggcattggcgcaatcaaaggc
gtgggtgaaggcccgattgaagccatcattgaagcacgtaatgaaggcggctatttcaaa
gagctgtttgatctctgcgcacgcgccgacgtcaaaaagctcaataaacgcattcttgaa
aaactgatcatgtccggggcatttgaccggctggggccgcatcgcgccgcgctgatgagc
tcgctcagtgatgcgctcaaggcggctgatcagcatgccaaagcggaagccattggtcag
gtggatatgtttggtgtgctggcagaggctcctgagcaggttgaaaagtcctactcgaac
gtgatgccatggccggaacaaacggttctcgatggtgaacgtgaaacgctcgggttgtat
ctcaccggccatccgatcacccagtatctgaaagaaattgaacgttatggcggcggccag
cgtttgaaagatatgcatccgacggaacggggcaaaatgaccgttgcggtggggctggtt
ctcgccgcgcgtgtcatggtcaccaaacggggtaaccgtattgggatctgtacgcttgac
gatcgttccggtcgtctcgaagtgatgttgttcaccgaagcgttggaaaaattccagcat
ttattggaaaaagaccgtatccttatcgccacaggacaggtcagctttgatgacttcagt
ggcgggcttaaaatgatggcccgcgatgtaatggacatcagtgaagcacgggaaaaatat
gctcgcggtcttgctatctcgctgactgacaggcaaattgatgaccagcttttgaaccgt
ctccgccaatcgttggaaccacatcgatcggggacgataccagtgcatctgtattaccaa
cgagaaaacgcaagagcccggctacgattcggggcgtcatggcgtgttacgccaacggac
aaactattgctggatttgcgaggcctggtcggtactgagcaggtggaactggaatttgac
taa
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