Rahnella victoriana: J9880_15640
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Entry
J9880_15640 CDS
T07871
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
rvc
Rahnella victoriana
Pathway
rvc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rvc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
J9880_15640 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rvc03400
]
J9880_15640 (sbcB)
Enzymes [BR:
rvc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
J9880_15640 (sbcB)
DNA repair and recombination proteins [BR:
rvc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
J9880_15640 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
J9880_15640 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
J9880_15640 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
UHM89733
LinkDB
All DBs
Position
complement(3398630..3400057)
Genome browser
AA seq
475 aa
AA seq
DB search
MSDKPQKTFYFHDYETFGKNPALDRPAQFAGVRTDEDFNIIEEPLVIYCRPSDDYLPEPE
AVMITGITPQIALERGVIEAEFTAQIHKAFSVPGTCIVGYNNIRFDDEVSRNILYRNFYD
PYAYSWQNGNSRWDLLDVMRACYALRPEGINWPENDDGFPSFRLEHLTRANGIEHENAHD
AMADVYATIAMAKLVKQAQPRLFSFLLEHRSKHKLNTLIDIPAMAPLVHVSGMFGAARGN
TAWVAPLAWHPENKNAVIMCDLAGDMSTLLDLDPDEMRERLYSRRDALQAGQSPLPVKLV
HINKCPVLAPAKTLLPENAERLGIDRQRCLENLQLLRQNPQVREKVVTMFAEAEPFTPSD
DVDARLYDGFFSDADRAAMRIILETRPENLPALDLTFNDSRIEPLLFRFRARNYAATLTD
AEQKRWMLHRQEKLTDERVQAYILELESLYNLHEGDVEKMALLKALFEYGKKLVG
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacaagccgcaaaaaacgttctacttccacgattacgagaccttcggtaagaat
ccggcgctggaccgtccggcgcagtttgccggggtgagaactgacgaagacttcaacatc
atcgaagaaccgttggtcatttattgccgcccttctgacgattacctgccggaaccggaa
gcggtgatgatcaccggtattacaccgcagatcgcgctggaacgcggcgtgatcgaagcg
gaatttaccgcgcaaatccacaaggcattcagcgtaccgggcacctgcattgtcggttat
aacaatatccgtttcgacgatgaagtcagccgcaatatcctgtatcgcaacttttacgac
ccgtatgcctacagctggcagaacggtaactcccgctgggatctgcttgatgtgatgcgc
gcctgttatgcgctgcgtccggaagggatcaactggccggaaaacgatgacggattcccg
agtttccgccttgagcatctgaccagggccaacggcatcgagcatgaaaatgcccatgat
gcgatggccgacgtttacgcgactatcgcgatggcgaaacttgtgaagcaggcgcagccg
cgtctgttcagttttctgcttgaacaccgcagcaaacataaactcaataccctgatcgac
atccctgcgatggcgccgctggtgcatgtttccggtatgtttggcgcagcacgcggtaat
accgcctgggtcgcgccgctggcctggcatcctgaaaataagaacgccgtgatcatgtgc
gatctcgccggtgatatgtcgacgttattagatctcgatcctgatgagatgcgtgaacgt
ctgtacagccgccgcgatgcgttgcaggcgggtcagtctccgctgccggtcaagctggtg
catatcaataaatgtccggtgctggcaccggccaaaacgctgttgccggaaaatgccgaa
cggctgggcattgaccgtcagcgttgtcttgagaatttgcagttactgcggcagaacccg
caggtgcgcgagaaagtggtcacgatgtttgccgaagccgaaccgtttacaccttccgat
gacgtggatgcccgcctgtacgacggtttcttcagcgatgccgatcgcgccgcaatgcgc
attattctggaaacccgtccggaaaatctgcccgcactggatctgacttttaatgattcc
cgcatcgagccgttgttgttccgcttccgtgcgcgcaactacgccgccacgctgaccgat
gccgagcagaagcgctggatgttgcaccggcaggagaaactgacggacgaacgtgtgcag
gcgtacattttagagcttgaatcgctgtataacttgcatgagggggatgttgagaagatg
gcgcttctcaaggcgctgtttgaatatgggaagaaactggtgggttaa
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