Rahnella victoriana: J9880_18980
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Entry
J9880_18980 CDS
T07871
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rvc
Rahnella victoriana
Brite
KEGG Orthology (KO) [BR:
rvc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvc03019
]
J9880_18980 (hrpA)
Enzymes [BR:
rvc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
J9880_18980 (hrpA)
Messenger RNA biogenesis [BR:
rvc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
J9880_18980 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
WHD_HA2
nSTAND3
NACHT
T2SSE
nSTAND_NTPase5
ResIII
PhoH
SLFN-g3_helicase
NTPase_1
AAA_30
AAA_16
Motif
Other DBs
NCBI-ProteinID:
UHM90358
LinkDB
All DBs
Position
complement(4126398..4130273)
Genome browser
AA seq
1291 aa
AA seq
DB search
MKSPLAALSAQLDGLMLRDRQRLQRRLQGARKLDKPDALDALSAEIQTAITESLKKVSAR
EASRPKISYPENLPVSQKKDDIYNAIRDHQVVIVAGETGSGKTTQIPKICMELGRGIKGV
IGHTQPRRLAARTVANRIADELDTTLGNTVGYKVRFNDQVSENTLVKLMTDGILLAEIQQ
DRMLMQYDTLIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPQRFSRHFNNA
PVIEVSGRTYPVDVRYRPIVDDADDVDRDQLQAIFDAVDELGRESMGDILIFMSGEREIR
DTADALNRLDLPHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVI
DPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEQDFLSRPEFT
DPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELNAINNAVDGRYT
LTPLGRQLAQLPVDPRLARMVLEAQKNGCVREVMIITAALSIQDPRERPMDKQQASDEKH
RRFADKDSDFLAFVNLWDHLKVQQKELSSAQFRKLCRSDFLNYLRVREWQDIYTQLRQVV
KELGLPVNSVPAEYREVHCALLTGLLSHIGQKDADKQEYTGARNARFAVFPGSGLFKKPP
KWVMVAELVETSRLWGRIAARIEPEWIEPLAKHLAKSSYSEPHWEKAQGAVMATEKVTLY
GLPIVAARRVNYGTIDPVVSRELFIRHALVEGDWQTRHAFFRANLRLRTEVEELEHKSRR
RDILVDDETLFLFYEQRIGQEVVSARHFDTWWKTQPQDSLNFEKSMLIKEGAGNISAHDY
PNFWHQGNLKLRVTYQFEPGTDADGVTVHIPLPLLNQVSEEGFDWQIPGIRRELIMALIK
SLPKPVRRNFVPAPNYADALLGRIKPFEMPLLDAMEKELRKMSGVTVSRDDWQLEQVPDH
LKMTFRIVDDKNKTLREGKDLNALKSGLKEQVQQTLSAVADDGIEQRNLHVWSFGTLPER
YEQKRGGYEVKAYPAIVDEKDSVAIRLFDSELEQQQAMLSGMRRLLLLNIPSPVKYLHEK
LPNKAKLGLYFNPYGKVLDLIDDCISCGIDKLIAESGGLVWREEDFARLHEHVRANLNDT
VVQIAIQVEQILTTVFSINKRLKGRIDITMALALSDIKAQMSGLIYRGFVTQNGWKRLPD
TLRYLQAIERRMDKLAMDPHRDRAQMLKVENIQQQWQQWLNKLPPVRQQSEDVKEVRWMI
EELRVSYFAQQLGTPYPISDKRILQTMEQLV
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcaccgctcgcggcattatcagcgcagttagacgggctgatgctacgtgaccgg
caacgcctgcaacgtcgtttgcagggtgccagaaagttggataaacccgacgcactcgac
gcgttaagtgccgaaatccagaccgctatcaccgagagcctgaagaaagtcagtgcccgt
gaagcctcgcggccaaaaatcagctatccggaaaacctgccggtcagccagaagaaagac
gacatttataacgctatccgcgatcaccaggtggtgattgtggcgggcgaaaccggctcc
ggtaaaaccacgcagatcccgaaaatctgtatggaactcggacgcgggatcaaaggcgtg
attggtcatacccagccgcgacgtctggcggcgcgtaccgtcgctaaccgtatcgccgat
gagctggataccacgctcggcaacaccgtcggttataaagtccgttttaacgatcaggtc
agtgaaaacacgctggtcaagctgatgaccgacggtattctgctggcggaaatccagcag
gaccgcatgctgatgcagtacgacacgctgatcatcgatgaagcgcatgaacgcagtctg
aacatcgactttattctcggttatctgcgtcagctattgccgaaacgcccggatctgaaa
gtcatcatcacctccgcgacgattgatccgcaacgtttctcgcgtcatttcaacaatgcg
ccggtcattgaagtctccggccggacgtatccggttgacgtgcgctatcgcccgattgtc
gatgacgccgacgatgtggatcgtgaccagttgcaggcgattttcgacgccgtcgatgaa
ctgggtcgcgaaagcatgggcgacatcctgatcttcatgagcggggaacgtgaaattcgt
gataccgcggatgcgctgaaccgtctggatttgccgcataccgagattttgccgttgtat
gcgcgcctgtcgaacagcgaacagaaccgcgtattccagtcgcattccggccgtcgtatc
gtgctggcgaccaacgtcgccgaaacctcgctgaccgtgccgggcattaaatacgtgatt
gaccccggcaccgcgcgtatcagccgttacagcttccgcaccaaagtgcagcgcctgccg
atcgagccggtgtctcaggcgtcggccaaccagcgtaaagggcgttgcggacgtgtgtcc
gagggcatctgtatccgtctgtattcggaacaggatttcctgtcacgcccggaatttacc
gaccctgaaatcctgcgcaccaacctggcgtccgtcattctgcaaatgacctcgctgggg
ctgggcgatatcgccgcattcccgtttgtggaagcgccggataaacgcaacattcaggac
ggcgtgcgtctgctcgaagaactgaacgccatcaataatgccgtcgatggccgttatacg
ctgacaccgcttggccgccagttggcgcagttgccggtggatccgcgtctggcacgcatg
gtgctggaagcgcagaaaaacggctgtgtgcgggaagtgatgatcatcaccgccgcgctg
tcgattcaggatccgcgtgaacgaccgatggacaaacagcaggcgtccgatgagaaacat
cgtcgttttgccgacaaggattctgattttctggcatttgtgaacctgtgggatcacctg
aaagtgcagcagaaagagctgtcttccgcacagttccgcaagctgtgccgcagtgatttc
ctcaactatctgcgcgttcgcgagtggcaggatatttacacccagctccgtcaggtagtg
aaagaactggggctgccggtgaacagcgtcccggcggagtaccgtgaggttcactgcgcg
ctgctgaccggtttgctgtcgcatatcggccagaaagatgcggataaacaggaatatacc
ggggcgcgtaatgcgcgttttgccgtcttccctggctccgggttatttaaaaaaccgcca
aaatgggtgatggtcgccgaactggtggaaaccagccgtttgtgggggcgtattgccgcg
cgtatcgaaccggaatggattgagccgctggcgaagcatctggcgaaaagcagttacagc
gagccgcactgggaaaaagcacagggcgcggtgatggcgacggaaaaggtcacgttgtac
ggcctgccgatcgtggccgcgcgtcgggtgaattacggcacgattgatccggtcgtctca
cgcgagctgttcatccgccatgcgctggtggaaggcgactggcaaacgcgccatgcgttc
ttccgcgctaacctgcgtctgcgtaccgaagtggaagagctggaacataaatcccgtcgc
cgcgatattctggtcgatgatgaaaccctgttcctgttctacgaacagcgtatcgggcag
gaagtggtgtcggcacggcactttgatacctggtggaaaacgcagccgcaggacagcctg
aactttgaaaaaagcatgctgatcaaagagggcgcgggcaatatcagcgcccatgattac
ccgaatttctggcatcagggcaatctcaaactgcgcgtgacgtaccagtttgaaccgggg
acggatgctgacggcgtgaccgtgcatattccgctgccgctgctcaatcaggtgagcgaa
gagggctttgactggcagatcccggggatccgccgcgagctgatcatggcgctgattaaa
tccttgcctaagccggtacgtcgtaattttgtgcctgcaccgaattacgccgatgccttg
ctgggccgcatcaaaccgtttgagatgccgctgctggatgccatggaaaaagagctgcgc
aagatgagtggcgtgacggtgtcacgtgacgactggcagctggaacaggtgccggatcat
ctcaaaatgaccttccgcatcgttgacgataaaaacaaaacgctgcgggaaggcaaagat
ctgaacgcactgaaatccggcctgaaagagcaggtgcagcagacgctttccgccgtcgcg
gatgacggcatcgaacagcgcaacctgcatgtctggagttttggcaccttgccggaacgc
tacgagcaaaagcgcggtggctatgaagtgaaagcctatccggcgattgtcgatgagaaa
gacagtgtagcaatccgtctgttcgacagcgaactcgaacagcagcaggcaatgctcagc
gggatgcggcgcctgctgttgctcaacatcccgtcgccggtcaaatacctgcacgagaag
ttgccgaacaaagccaaactggggctgtacttcaatccgtatggcaaagtgctggatctg
atcgacgactgcatctcctgtggcattgacaaactgatcgctgaatccggcggcctggtg
tggcgtgaagaagatttcgccagactgcatgagcatgtgcgcgccaatctgaatgatacg
gtggtgcaaatcgccattcaggtggagcagatcctgacgactgtcttcagcatcaacaag
cggctgaaagggcggattgatatcaccatggcgctggcgctttctgatatcaaagcgcag
atgtccggcctgatttatcgggggttcgtgacgcaaaatggctggaaacgtctgccggat
acgctgcgctatttgcaggcgattgaacgccggatggacaaactggccatggatccgcac
cgcgatcgtgcgcagatgttgaaagtggaaaacatccagcagcaatggcagcagtggctg
aacaaactgccgccggtgcgtcagcaaagcgaggacgtgaaggaagtccgctggatgatt
gaagaactgcgcgtcagctacttcgctcagcaactgggcacgccgtatccgatatcggat
aaacgtattttgcagaccatggaacagctggtttaa
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