Rahnella victoriana: J9880_20275
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Entry
J9880_20275 CDS
T07871
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
rvc
Rahnella victoriana
Pathway
rvc00300
Lysine biosynthesis
rvc00470
D-Amino acid metabolism
rvc01100
Metabolic pathways
rvc01110
Biosynthesis of secondary metabolites
rvc01120
Microbial metabolism in diverse environments
rvc01230
Biosynthesis of amino acids
Module
rvc_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
rvc00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
J9880_20275 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
J9880_20275 (dapF)
Enzymes [BR:
rvc01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
J9880_20275 (dapF)
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GFIT
Motif
Pfam:
DAP_epimerase
Motif
Other DBs
NCBI-ProteinID:
UHM90598
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Position
4414939..4415778
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AA seq
279 aa
AA seq
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MIFHRYHGLGNDYLVCHHSVAALLSNQQIQRVCDRHYGIGSDGLLIDDDGADIPSLRIIN
PDGSEAEKSGNGLRIYARYLFDIGRVTHEPFLVNTAGGQVRCEVTEGAHQVIVDMGQAKF
SPAALPATVEGDEALALPLVAGGHNLSATLVSMGNPHCVIRVEKLDLDLVRQLGAEIETL
AIFPKRTNVQFAQVIDRNTIRIGIWERGAGYTLASGSSSCAAASAMRKLGLVDDTVTVQM
PGGELAIRFSGDFQVNMRGPVQKIATLTLDNDCFRDMPA
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atgatttttcaccgctatcacggactgggtaatgattatctggtctgccatcacagcgtc
gccgccctgctcagcaatcagcaaattcagcgcgtctgcgaccgccattacggcatcggt
tccgacggtctgctgatcgacgacgacggtgctgacattccctccctgcgcattattaat
cccgacggttcagaagctgagaaaagcggcaacggtctgcgtatttacgcccgctatctg
tttgatatcggacgggtcacgcatgaaccttttctggtgaacacggcgggcggacaggtg
cgctgcgaagtcaccgaaggtgcgcatcaggtgattgtggatatggggcaggcaaaattc
tcgccagccgcgttacccgctacggttgaaggcgatgaagccctcgcgttaccgctggtg
gctggcgggcacaatctcagcgcaacgctggtgtcgatgggcaatccgcactgtgtgatc
cgggtggaaaagctggatctggatctggtcaggcagctcggtgctgaaattgaaacgctg
gcgatttttccgaaacgtaccaacgtgcagttcgcgcaagtcattgatcgcaatactatc
cgcatcggcatctgggaacggggcgcggggtatacgctggcttccggcagcagcagttgt
gcggcggccagcgccatgcgcaaactcgggctggtggacgacaccgttaccgtgcagatg
cccggcggtgaactcgccatccgtttcagcggcgattttcaggtcaacatgcgcgggccg
gtgcagaaaatcgccacccttaccctcgataacgactgtttccgggatatgcccgcatag
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