Rahnella victoriana: J9880_22250
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Entry
J9880_22250 CDS
T07871
Name
(GenBank) PD40 domain-containing protein
KO
K01730
oligogalacturonide lyase [EC:
4.2.2.6
]
Organism
rvc
Rahnella victoriana
Pathway
rvc00040
Pentose and glucuronate interconversions
rvc01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rvc00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
J9880_22250
Enzymes [BR:
rvc01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.6 oligogalacturonide lyase
J9880_22250
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Gene cluster
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Motif
Pfam:
Pectate_lyase22
Tricorn_N
PD40
Tricorn_2nd
DPPIV_N
Motif
Other DBs
NCBI-ProteinID:
UHM93398
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Position
unnamed1:192734..193915
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AA seq
393 aa
AA seq
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MAKGSQIQFSFHTVQDPQTGARVTRLTPPDVLCHRNYFYQKCFTRDGNRLLFAGEFDGNR
NYYLLDLKTQKAVQLTEGKGDNTFGGFLSPDDQSLYYVKNERSLQCVKLADFSEKTVYTV
PEEWVGYGTWVANSECTSLVGIEISREDWTPLSDWKIFQEFYHSNPHCRLLRVDLLSGKS
RVIHEKNEWLGHPIYRPFDDSTVAFCHEGPHDLVDARMWLVNEDGSHVRKVKEHAPGESC
THEFWVPDGSALVYVSYLKGQHDRHIRRFDPQTGEDICLMTMPACSHLMSNENGTLLVGD
GSGTPVDVKDTASHTIENDPWLYIFDAETRQHAPLAAHNSSWRVLDGDRQVTHPHPSFSP
DDRHVLFTTDYEGKPALYLAEIPDALLSSLRKD
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaggttctcagattcaatttagtttccacaccgttcaggatccgcagaccggt
gcccgcgttacgcgtctgacgccgccggatgtgttgtgtcatcgtaactatttctatcag
aaatgttttacccgcgatggcaaccggctgttgtttgccggtgaatttgacggcaaccgc
aactattacctgctggatctcaaaacgcagaaagcggttcagctcaccgaaggcaaaggt
gataacacctttggcggcttcctgtcaccggatgatcagtcgctttattacgtcaaaaat
gagcgcagtttgcagtgcgtaaaactggctgatttcagcgagaaaaccgtctataccgtg
ccggaagaatgggtcggctacggcacctgggtggcgaacagcgaatgcaccagcctggtg
gggatcgaaatcagccgtgaagactggacaccgctgtccgactggaaaatcttccaggag
ttttatcacagcaacccgcattgccgcctgttgcgtgtcgatttactcagtggcaaatcc
cgcgtgatccacgagaaaaacgaatggctggggcacccgatttatcgtccgtttgatgac
agcacggtggcattctgccacgaaggcccgcacgatctggtcgatgcgcggatgtggctg
gtgaatgaagacggtagtcatgtgcgcaaggtcaaagaacatgcgccgggtgaaagctgc
acgcatgaattctgggtgccggacggttcggcgctggtgtatgtttcctatctgaaaggc
cagcatgaccggcatatccgccgtttcgatccgcagaccggcgaagatatttgcctgatg
accatgcccgcctgctcgcatctgatgagtaacgagaacggcacgctgctggtcggcgac
ggttcgggaacgccggtggatgtcaaagataccgccagccataccattgaaaacgatccg
tggttgtatattttcgacgccgaaacccgtcagcatgcgccgctggccgcgcacaacagt
tcatggcgtgtgctggatggcgaccgtcaggtcacgcatccgcacccttccttctcgccg
gatgaccgtcatgtgttgttcaccaccgattacgaaggcaaacccgcgttgtatctggcg
gaaatcccggatgccctgctcagctcattaagaaaggattaa
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