Candidatus Rickettsiella viridis: RVIR1_02780
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Entry
RVIR1_02780 CDS
T05765
Symbol
hupB
Name
(GenBank) nucleoid DNA-binding protein
KO
K03530
DNA-binding protein HU-beta
Organism
rvi
Candidatus Rickettsiella viridis
Brite
KEGG Orthology (KO) [BR:
rvi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rvi03032
]
RVIR1_02780 (hupB)
03036 Chromosome and associated proteins [BR:
rvi03036
]
RVIR1_02780 (hupB)
03400 DNA repair and recombination proteins [BR:
rvi03400
]
RVIR1_02780 (hupB)
DNA replication proteins [BR:
rvi03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
RVIR1_02780 (hupB)
Chromosome and associated proteins [BR:
rvi03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
RVIR1_02780 (hupB)
DNA repair and recombination proteins [BR:
rvi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
RVIR1_02780 (hupB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
Motif
Other DBs
NCBI-ProteinID:
BBB14804
UniProt:
A0A2Z5UTN2
LinkDB
All DBs
Position
295409..295699
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AA seq
96 aa
AA seq
DB search
MNKSDLIEVIVESAGIPKNIAGKTLDKILQSITHALKKGEDVALIGFGTFKVNERKARTG
RNPKTGEVLQIPASNVASFKVGKGLKDAVQSLGQKE
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaatcagatttaattgaagttattgtagaatctgcaggtattccaaaaaatatt
gctgggaaaacattagataaaattttacaatcgattacgcatgcattaaaaaaaggcgaa
gatgtggctttaatcggttttggcacttttaaagtaaacgaacgcaaagcgcgcacaggt
cgtaaccctaaaacaggagaagtgttacagattccagcaagtaacgttgcttcttttaaa
gttggaaaagggctcaaggatgcagtgcaaagtttaggacaaaaagagtag
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