Candidatus Rickettsiella viridis: RVIR1_04230
Help
Entry
RVIR1_04230 CDS
T05765
Symbol
holA
Name
(GenBank) DNA polymerase III delta subunit
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
rvi
Candidatus Rickettsiella viridis
Pathway
rvi03030
DNA replication
rvi03430
Mismatch repair
rvi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RVIR1_04230 (holA)
03430 Mismatch repair
RVIR1_04230 (holA)
03440 Homologous recombination
RVIR1_04230 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rvi03032
]
RVIR1_04230 (holA)
03400 DNA repair and recombination proteins [BR:
rvi03400
]
RVIR1_04230 (holA)
Enzymes [BR:
rvi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RVIR1_04230 (holA)
DNA replication proteins [BR:
rvi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RVIR1_04230 (holA)
DNA repair and recombination proteins [BR:
rvi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RVIR1_04230 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delt_C
DNA_pol3_delta
DNA_pol3_delta_C
DNA_pol3_gamma3
PPR_3
Motif
Other DBs
NCBI-ProteinID:
BBB14936
UniProt:
A0A2Z5UTJ9
LinkDB
All DBs
Position
complement(443515..444537)
Genome browser
AA seq
340 aa
AA seq
DB search
MQLRYEQLNTLLEKKPLAPIYFVSGEELLLVQMACDSIRNSAKKQGFSEREVFYAESGFN
WHTLLTHANNYGLFSEKQILELHLLQGVSESAAQTLKTYASDPPANKLLLVITGKLDRRL
LQTTWFKSIDSVGVFMALWPMEQAQLSRWITERLASLGLKAEKEAIQYLISATEGNLLAS
AQEIEKLSLYFASDTQHIITPEAMMQALSDNARFDPFKLTDAALQGEAKRCLRILNRLRE
EGVEPLLILWSLSRECRQLASLAFQLAKGQNLRTLFQTHHIWEKRQPLFQQALQRHSLTH
WYTLLKLATQSDRIIKGVISGNIWHALQQLSLQLAGIKPL
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgcaattgcgctatgaacaattgaacacgctattagagaagaagccattagcaccgatt
tattttgtcagtggcgaagaacttctgctcgtacaaatggcctgtgatagcatccgaaac
agcgcaaaaaaacaaggtttttctgagcgtgaagtattctatgccgaatctggttttaat
tggcacacactactcacccatgctaacaattatggcttattttcagaaaaacaaatttta
gagttacatcttttacaaggtgtttctgaatcggcggcacaaacgcttaaaacctatgca
agcgatccacccgccaataagcttttactggttattacaggaaaattagatcgccgctta
ctgcaaaccacttggtttaaaagtattgatagtgtcggtgtttttatggcgctatggccg
atggaacaggcccaactctcacgatggatcacagaacgtttagccagcttaggcttaaaa
gcagaaaaagaagcaattcagtatcttatttcagccacagaaggaaatttattagctagc
gcacaagaaattgaaaaactcagcttatattttgcatcagacactcagcacatcattaca
ccggaagcgatgatgcaagcgctttcggataatgcacgtttcgatccttttaaactgaca
gatgcagcactacaaggtgaagcgaaacgttgcttgcgaattttaaatcggctcagagaa
gaaggggttgaacctttattaatcttatggtcactcagccgagaatgtcgacaattagcc
tcgttagcctttcaattagccaaaggacaaaatttaagaacactttttcaaacgcatcat
atctgggaaaaacgccaacctttatttcagcaagctttacagcgtcactctcttacccac
tggtatacactattaaaacttgctacccaaagcgatcgcattataaaaggtgttatctca
ggcaatatctggcatgcattacaacaactaagccttcaattagcaggcataaaacccttg
tga
DBGET
integrated database retrieval system
