Candidatus Rickettsiella viridis: RVIR1_04520
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Entry
RVIR1_04520 CDS
T05765
Symbol
dacB
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
rvi
Candidatus Rickettsiella viridis
Pathway
rvi00550
Peptidoglycan biosynthesis
rvi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rvi00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
RVIR1_04520 (dacB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rvi01002
]
RVIR1_04520 (dacB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rvi01011
]
RVIR1_04520 (dacB)
Enzymes [BR:
rvi01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
RVIR1_04520 (dacB)
Peptidases and inhibitors [BR:
rvi01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
RVIR1_04520 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:
rvi01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
RVIR1_04520 (dacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S13
Stereocilin
Peptidase_S11
PilS
Motif
Other DBs
NCBI-ProteinID:
BBB14964
UniProt:
A0A2Z5UU20
LinkDB
All DBs
Position
472910..474349
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AA seq
479 aa
AA seq
DB search
MKYAISLLLLLFSFSLCAEDKSFAPQTSELFVDLTHPKVLYANHASLALIPASVTKLFVA
ASALKHWGSYHTFASEIYQRGQWKQGVLIGDLVFYGQGDPAFTNEKMWQLVNNLQQLGLK
KITGNLIVNTSYLGNITVSASDRIAAKSYSKVSYDSLPSSAGSNFSTVGVAIMPGEKAGD
LAQIKILPYQLQNVRLDGNVMTASGANNTLQLHRLSQAGKEILTLSGTIGLKSVPVILYR
SVGNPNILTGALLKAFLKQAGIFLDGKIIIETTPLKKTDKQLAQVQSDSLIHCLQDMLRY
SNNYIADVLTLDLERENHTSLSSMKLSEAAKILLATYRRVLHQSSFSQQTELDPIFASGS
GLTPSNRISASNLITLLAGMYHDQRDFSLFYGSLVVPGQQTHWHNLSTINHPWMNQVSLK
TGYITVPKIVHSLAGYFRMKNGDIGAFAVLFNFPPEAQNDEGQLFNGLIKHLDSVFQRI
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatacgccattagtttacttcttttacttttttcctttagtctatgcgctgaagat
aaatcctttgcgccgcaaacatctgaattgtttgttgatttaacccatcctaaagtcctc
tatgctaaccatgcgtcgttagcgttaattccggcatcagtgactaaactttttgtagcc
gctagcgcattgaaacactggggtagttaccatacatttgctagcgaaatttatcaacga
ggccaatggaaacagggtgttctaataggggatttggttttttatggacaaggtgatccg
gcattcacgaacgaaaaaatgtggcaattggttaacaatctgcagcagttggggttaaag
aaaattaccggtaacctcattgtaaatacctcttatttaggaaatataacggttagcgca
tcggataggattgcggcaaaaagctattctaaagtgtcttatgattctttaccttcttca
gcaggaagcaacttttcaaccgtgggtgttgccattatgccaggtgaaaaagcgggtgat
ttagcgcaaataaaaatcttaccttatcaattacagaatgtacgccttgatggaaacgtg
atgacagcgtctggagcaaataatacacttcaattacatcgtttgagtcaagcgggcaaa
gaaattcttacgctttcaggaacaataggtctaaagagtgtgcctgttatcctttatcgt
tcagtcggaaaccctaatatactgacaggcgctttattaaaagctttcttaaagcaagca
ggtatttttctggacggaaaaattattatcgagactacgcctctgaagaaaacagataaa
caattggcacaggttcagagtgattcactgattcattgtttacaagatatgctgcgttat
agtaataactatattgctgatgtattaaccttagatttagagagagaaaaccacacgtcc
ctttcgtctatgaagttgagcgaagcagcaaagatattgcttgctacttataggcgtgtg
ctgcatcaatcaagttttagccaacagacagagcttgatcctatttttgcgagtggtagt
ggtttaacaccgtcgaaccgaatatcagcgagcaacctgattacgttattagcaggaatg
tatcacgatcaacgcgatttttctcttttttacggtagtttagtggtgccaggacaacaa
acccattggcataatctatcgactatcaatcatccttggatgaatcaagtcagtttaaaa
accggttatattactgttccgaaaattgttcattctttagcgggttattttagaatgaag
aatggtgatatcggtgcatttgctgtgctatttaattttcctcctgaagcgcaaaatgac
gaggggcaattatttaatggtttaataaaacatttggatagtgtgttccaacgtatctaa
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