Candidatus Rickettsiella viridis: RVIR1_09940
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Entry
RVIR1_09940 CDS
T05765
Name
(GenBank) peptidoglycan-binding domain 1 protein
KO
K21470
L,D-transpeptidase YcbB
Organism
rvi
Candidatus Rickettsiella viridis
Brite
KEGG Orthology (KO) [BR:
rvi00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rvi01002
]
RVIR1_09940
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rvi01011
]
RVIR1_09940
Peptidases and inhibitors [BR:
rvi01002
]
Cysteine peptidases
Family C82
RVIR1_09940
Peptidoglycan biosynthesis and degradation proteins [BR:
rvi01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
RVIR1_09940
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
BBB15467
UniProt:
A0A2Z5V7J9
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All DBs
Position
complement(1044614..1045789)
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AA seq
391 aa
AA seq
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MSIKRQLIYLGLFGFFSVASAAESNNNPAYQRLEKMLALYQAAVQHPWPRLNTDQTLSVG
MQGPDVVVLRQRLCATHDLSPTVCNQQANNALFDEKIEEGVEFFQERHGLIADGDVGKLT
REALNVSPEQRVHQIQINLQRWSRLMALAEPAYIWINIPDHYLRLIKDHHAILEARIIVG
TPSRQTPEINSKVTRIILNPYWTVPPGIARNDVIPQIIKNQDYLRQHRMRVFSANRPNKA
LDPDEVDWLAAQKNPSRIILRQDPGPHNALGQIKFEFSNPHMIYLHDTPSKHLFDAERRL
FSSGCIRMEDPFDLLEALAEFDPSIKQTESQIETTLESGQTVSLRLKQAIPIHLTYITAW
VDKSGVLHLWDDVYSRDPKISATQKELAPVV
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgagtattaaaaggcagcttatttacttaggattatttggctttttttctgtagcaagt
gcggcggaatcaaataataatccggcctatcaacgtttagaaaaaatgttagcgctttat
caagcagcggttcaacatccgtggccacgactcaatacggatcaaaccttaagcgtaggt
atgcagggcccggatgtggtagtgctacgtcagcgtttgtgtgcgacgcatgatttatct
ccaaccgtatgcaatcaacaggcaaataatgcgctttttgatgaaaaaatagaagaaggc
gtagagttttttcaggaaaggcatggtttgatagcggatggcgatgtgggtaagttgacg
agagaagcactgaatgtttcgcctgagcaacgtgtgcatcaaattcaaattaatttacag
cgttggtcacgtttaatggcattagctgaaccggcttatatttggattaatattcctgat
cattatcttcgtcttatcaaagaccatcatgctattttagaggcacgcattattgtgggg
acaccgtcacgacagacgccagaaattaattcaaaagtaacacgtattatattaaatcct
tattggacagttccgcctggtattgcgcgcaacgatgttattccgcagattataaaaaac
caagattatttacggcagcatcgtatgcgggtattttcggctaatcgaccgaataaagcc
ttggatcccgatgaggtcgattggttggccgcacaaaaaaacccttcacgtattatttta
cgtcaggatcccggtccacataatgcattaggacagattaagtttgaattttctaatccg
catatgatttatctgcatgatacgccctctaagcatttgtttgatgcagagcgacgttta
tttagttcaggttgtatacgtatggaagatccgtttgatttgttggaagccttagcggaa
tttgatccttcgattaaacaaacagaatcacaaatagagacaaccttagaatcaggacag
acagtaagcctacgcttaaagcaagcgattcccatccatttgacgtacatcactgcctgg
gttgataaatcaggtgtgttacatttgtgggatgatgtttactcgcgcgatccgaaaatt
tctgcaactcaaaaagaattagcgccagtggtttaa
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