Candidatus Rickettsiella viridis: RVIR1_10820
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Entry
RVIR1_10820 CDS
T05765
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
rvi
Candidatus Rickettsiella viridis
Pathway
rvi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rvi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RVIR1_10820 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rvi03021
]
RVIR1_10820 (rpoA)
03400 DNA repair and recombination proteins [BR:
rvi03400
]
RVIR1_10820 (rpoA)
Enzymes [BR:
rvi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RVIR1_10820 (rpoA)
Transcription machinery [BR:
rvi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RVIR1_10820 (rpoA)
DNA repair and recombination proteins [BR:
rvi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RVIR1_10820 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Ribosomal_TL5_C
Motif
Other DBs
NCBI-ProteinID:
BBB15550
UniProt:
A0A2Z5UX25
LinkDB
All DBs
Position
complement(1145669..1146703)
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AA seq
344 aa
AA seq
DB search
MSTNVKKFLTPQTIEVQTLSQNRALVSLQPFEPGFGHTLGNALRRILLSSMPGCAVTEVR
IEGVLHEYSSLEGVQEDIIDILLNLKGIAFLLHDREEVTLELVKNTVGPVHAGDIELPHD
VEVKNPDYVIAHLTKPKEFKMTLKVVRGRGYQPASLRKTDQYVSQVGALELDALFNPILR
ATYSVENARVEQRTDLDKLVIDLETNGTIEPEEAIRRAATIVQEQLNTFVELRHETEAEV
PVPDADINPILLLPVDELELTVRAANCLKAEHIYRIGDLVQKTEQELLSTPNLGKVSLWE
IKTALQKRGLQLGMDVPVQQFSSLKKSMEGNTEELEKSEETKKD
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacgaatgttaagaaatttttgacaccacagacgattgaagttcagactttaagt
caaaacagagctttagttagtctgcaaccttttgagccagggtttggtcataccttgggg
aatgctttacgtcgtatattgttatcctctatgcctggatgcgctgtgactgaagtaaga
attgaaggtgttcttcatgaatatagtagcttagaaggcgtacaagaagacattattgat
attttacttaacttaaaaggtattgcttttctattacatgatagagaagaagtcacactt
gaattagtaaaaaatacagtcggtcctgttcatgccggtgatattgaattaccacacgat
gttgaggttaaaaacccggattacgttatcgcgcatttaacaaagcctaaagaatttaag
atgactttaaaagtcgtcagaggacgtggttatcaacctgcttcgttacgtaagacggat
caatatgtgagtcaagtgggtgctttagaattagatgcattatttaatccgattttacgt
gcgacttactctgttgaaaatgcacgggtagagcaacgtactgacttagataagttagtc
attgatttagaaacaaatggtacgattgagccagaggaagcgatacgtcgtgcagctacg
attgttcaggaacaattaaatacatttgttgaacttcgtcatgagacagaagcagaggtg
cctgtaccagatgcagatatcaatcctattttattgcttcctgttgatgaactcgagtta
acagttcgcgccgctaattgtttaaaagctgaacatatttaccgtattggtgatttagta
caaaaaacagaacaagaactattatcaacacctaatttgggtaaagtttctttatgggaa
attaaaacagccttacagaaacgtggtttacaattaggtatggatgttccagttcagcaa
ttttcttctttgaaaaaatcaatggaaggaaatactgaagaattagaaaaaagtgaagaa
actaaaaaagattaa
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