Candidatus Rickettsiella viridis: RVIR1_12610
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Entry
RVIR1_12610 CDS
T05765
Symbol
uvrD
Name
(GenBank) DNA-dependent helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rvi
Candidatus Rickettsiella viridis
Pathway
rvi03420
Nucleotide excision repair
rvi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RVIR1_12610 (uvrD)
03430 Mismatch repair
RVIR1_12610 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rvi03400
]
RVIR1_12610 (uvrD)
Enzymes [BR:
rvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RVIR1_12610 (uvrD)
DNA repair and recombination proteins [BR:
rvi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RVIR1_12610 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
RVIR1_12610 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
Viral_helicase1
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BBB15716
UniProt:
A0A2Z5UVS5
LinkDB
All DBs
Position
1335874..1338051
Genome browser
AA seq
725 aa
AA seq
DB search
MNNQESLLASLNEAQQKVVSAPEGHLLVLAGAGSGKTRVLVHRIAWLIDIEHISPHNILA
VTFTNKAAGEMRHRLETLVDLPIKMMWVGTFHGLAHRLLRQHWEAAGLPQAFQILDSDDQ
HRIIKRIIASLNLDEAQWVPKKIQWFINQQKDAGIRPNQVANANDPYNKTLIRVYQAYED
ICARNGAVDFAELLLRSYELFTKNPDILEHYQARFRHILVDEFQDTNTIQYAWLKLLCGD
QNCLMIVGDDDQSIYGWRGAKVENIHRFKKDFPNNQIIKLEQNYRSTGVILAASNALISH
NDGRLGKKLWSSGDQGELISLYGAFNDLDEARFIVDRIKQDVKKGFQFNENAILYRSNAQ
SRVLEEALIRAQIPYRIYGGLRFFERAEIKDALAYLRLIANRNDDQAFERVVNTPTRGIG
DQTVQTLRTEARSQSISLWESSQQLLSSNTLSARAANALTAFLQLIDQIDEETKTLSLSE
QTEQALYSSGLFAHYKKEKGERGQARIENLEELVNATRQFTPEDDSLSILSAFLAHVALE
SGEHQANNSENCVQLMTLHSAKGLEFPQVFLCGMEEGLFPHHMSHDEPGRLEEERRLCYV
GITRAMRKLYLTYAEVRRLHGTESQHRPSRFISEIPKELLDEVRLKTQIIRPTQLHSIKS
TRQKSQTIIGDTGLCLGQEVMHPTFGEGVIIDADGHGGHTRLQVKFNKVGTKWLVASFAK
LAVRN
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgaataatcaagaaagtttattagcctccctgaatgaagctcaacaaaaagtggtatcg
gcccctgaaggccacttactcgtgctggcaggtgcgggcagtggaaagactcgcgtatta
gtccatcgcattgcctggcttatcgatattgagcatatttctccacataatatccttgct
gtcacctttactaataaagccgcaggagagatgcgccatcgtttggaaaccttagtcgac
ctaccgataaaaatgatgtgggtaggtactttccatggacttgcacaccgcctactacgt
caacactgggaagccgccgggttaccacaagcctttcaaattctagatagtgatgatcaa
caccgtattattaaacgaattattgctagtctcaatctagatgaagcacagtgggtacct
aaaaaaattcaatggtttattaatcaacaaaaagatgcaggcattcgacctaatcaagta
gccaatgcgaatgatccgtataacaaaaccttaatccgtgtttatcaagcctatgaagac
atctgtgcccgtaatggtgccgttgactttgcggaactgctgttaagaagctatgagctt
tttaccaaaaatcccgatatcttagaacactatcaagcacgatttcgtcacattttagtc
gacgagtttcaagatacgaatactattcaatatgcctggttaaaattactctgcggcgat
caaaattgtttaatgatcgttggcgacgatgatcagtctatctatggttggcgcggcgcc
aaggtagaaaacattcatcgatttaaaaaagatttcccaaataatcagatcattaagctt
gaacaaaattatcgttccaccggtgtcattttagcagcatccaatgcattaatttcacat
aacgatggccgcctgggtaaaaaactatggagcagcggtgatcaaggtgaattaatatct
ctttatggtgcatttaatgatctagacgaagcgcgctttatcgtcgatcgaataaaacaa
gatgtaaaaaaaggattccagttcaatgagaatgctattttatatcgctctaatgcgcaa
tctcgcgtattagaagaagcattaatccgcgcacaaattccttatcgcatctacggtggg
ctacgcttttttgaacgtgctgaaatcaaagatgccttagcttatttacgtttgatcgcg
aatcgaaacgatgatcaagcctttgaacgcgtcgttaacacgcccacgcgaggcattggc
gatcaaaccgtgcaaacactacgcacagaggcacgaagccaaagcatttccttatgggaa
tcttcacagcaattattatccagtaacacgctatccgctcgcgcagccaatgcattaaca
gcctttttacagttgattgatcaaatagacgaagaaacaaaaacattatcgctttctgag
caaaccgagcaagccctttatagcagtggtttatttgcacattataaaaaagaaaaaggt
gaacgtggtcaggcgcggatcgagaaccttgaagaacttgtgaatgccacacgtcaattt
acaccagaagatgatagcctttccatactatccgcctttttagcgcacgttgcattggag
tcgggtgagcatcaagcgaataactcagaaaattgtgtacaattaatgaccttacactcg
gcgaaaggacttgagtttccacaagtatttttatgcggcatggaagaaggtttgtttcca
catcatatgtcccatgacgagcccggccgcttagaagaagaacgtcgtttatgttatgtg
ggtataacacgcgctatgcggaaactttatctaacttacgcagaagtacgtcgcttacat
ggcacagaaagtcagcatcggccttcacgatttatttctgaaattccaaaagaactctta
gatgaagtgcggctaaaaacacaaataatacggcctacccaattacattctataaaaagc
acgcgccaaaaaagccaaacaataattggcgatacaggattatgcttaggacaagaggta
atgcaccctacctttggtgaaggcgttattattgatgccgatggtcacggcgggcatacc
cgactgcaggttaaatttaataaagtaggtacaaaatggctagtcgcaagttttgctaag
cttgccgttcgtaattaa
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