Rhododendron vialii: 131298847
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Entry
131298847 CDS
T09330
Name
(RefSeq) zinc finger CCCH domain-containing protein 41
KO
K13192
RNA-binding protein 26
Organism
rvl
Rhododendron vialii
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
rvl01009
]
131298847
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131298847
03041 Spliceosome [BR:
rvl03041
]
131298847
Protein phosphatases and associated proteins [BR:
rvl01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
131298847
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
131298847
Spliceosome [BR:
rvl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
131298847
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
zf_CCCH_4
RRM_Nup35
PHM7_cyt
DUF4407
RNA_bind
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
131298847
NCBI-ProteinID:
XP_058180323
LinkDB
All DBs
Position
8a:complement(5175686..5185995)
Genome browser
AA seq
918 aa
AA seq
DB search
MELKVSSPKDGRLSPSDCLSDPEEKEITDDEDDDRNHKHRRRETRSQSMERDSVEQVLTR
PYRKRNKPFENGHLRENHSQSNETWKSYNMSPLEKDLSTKFDKRRPGFSTFSRAPNRVNQ
SSSAEPGSGRGRGRESGFWGPRDPRFSNVDIASQMVSQGSSLFAGRGLPNVSNSQGGSWN
AFGLIPGIPNGGMDTLHSLSLQGALGPSISPLNIGLPRQRCRDFEERGFCLRGDMCPMEH
GVNRIVVEDVQSLSQFNLPVSLPSTHLVGTPSALPSVNAPSSTLIHGKSLHNKSSKHGMA
DDGFSMNGVFTGSAGGADFYDPDQPLWAKNGPENSTALLGLNSSKLDESESLLDGPDNEY
LGRSTATAAGSLNASSNVWGRIGAKTKLGMKKKIDSTMSSSNTMENDAKEGQEALTNLQG
PTRQEKRIIAEDVGSQASDLSAKVQGDTGRITRKPSQKALRTLFVNGIPQKDNRRESLFS
HFRKFGEVIDIYIPVNSERAFVQFSKREEAEAALKAPDAVMGNRFIKLWWANRDSILDDG
TSSGNNVSVAPRGVAAVSLPPHLFVSHGGKDSLQLSAPKVGVSNASVAAVLPASDHPKPV
MTSSPKAPPPLQKKQESLEFLKEELRKKQELLDQKRNDFRRQLHKLERQTSGVRGDVPSE
HGAKRHKPATVADVGKVATPRSAESGTVVASPLAEVMSERNKSAENVDQQSSKQSTFVAP
QEPSSLKHSIRPLAPAGASFVMNRFKLDNRPTAFKIIPPLPIGLANVAVLKEHFSDYGEL
SAVEIEDVESSDSLASQNCSAHISFTTRLSAERAFLNGRCWQGHNLQFTWVVSSNSSNGN
GVRENSPSASKMPSDANLQPAVEVTPIDYHNEAASKDGESNILDRKESGGEHMVSDEHLR
SSSSAISCEKQSPKRDVC
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atggagctaaaagtttcatctccgaaggatgggcgtctttcaccttctgattgtctcagt
gatcctgaagagaaagaaattactgatgatgaagatgatgaccgtaatcataagcatcgt
agacgggagacacgatctcagtcaatggagagagattccgtggaacaagttctaacaagg
ccatatagaaagagaaacaaaccttttgaaaatggccatcttagggaaaaccattctcag
tcaaatgaaacctggaaaagttataatatgtcccctctggagaaagacctgtctacaaag
tttgacaaacgacgccctgggttttccactttttctcgagctccaaacagggttaatcaa
tcatcatctgctgagcctggctctggtaggggtagaggtagggaatcaggtttctggggc
ccacgtgatcctaggttcagcaacgttgatattgcttctcaaatggtttcacagggatca
agtctgtttgcagggagggggttaccaaatgtttcgaactcacagggtggatcctggaat
gcatttggattgattccaggaatccctaatggtggtatggatacacttcattcccttagt
ttgcaaggagcacttggaccatcaatcagtccactaaatataggtcttccccgccaacgg
tgtagagattttgaggagcgtggcttttgcctaaggggagacatgtgtccaatggagcat
ggtgtcaaccggattgttgttgaagatgttcagagcctttcacagttcaatctcccggtc
tcacttccaagtacacaccttgtgggaactccctctgctttaccttctgttaatgctcct
tcgagcacattgatacatggcaaaagtctacataacaaaagcagcaagcatggaatggca
gatgatggatttagcatgaatggtgttttcactggttcagctggtggggctgatttttat
gatcctgatcagcctctgtgggctaaaaatggtccagaaaattcaacagcattgctagga
ctaaattcatctaagcttgatgaatcagagtctttgttagatggacctgacaatgaatac
cttgggaggagtactgcaactgctgctggttctttaaatgcaagttcaaatgtctgggga
agaattggtgcaaaaactaaattgggaatgaaaaagaaaattgattctaccatgagctcc
tcaaataccatggaaaacgatgcaaaggaaggtcaggaggccttaaccaatcttcaggga
cctacccgccaggagaagcggatcattgcagaagacgttggctcacaagccagtgattta
tctgcaaaggtgcaaggtgatactgggcgtattacccggaaaccttctcaaaaagcgcta
cgtactctatttgtcaatggtattccccaaaaagacaatagaagagagtcccttttttct
catttccgaaaatttggggaggttattgacatttatattccagttaatagtgagcgagct
tttgttcagttctccaagagggaggaggcagaagctgctctgaaggcacctgatgctgtt
atgggtaacaggtttatcaagctatggtgggctaatcgagacagtattctcgatgatgga
acaagtagtggtaacaatgtatcagtagctcctcgtggagtggcagctgtttcattgcca
ccccatctatttgtttctcatggaggaaaggatagcctccaattgtccgctccgaaagtt
ggtgtttccaatgcttctgttgctgctgtgctgcctgcctctgatcatcctaagcctgtg
atgaccagcagcccgaaagctccacctcctttgcaaaagaagcaggagagtttagagttt
ttgaaggaggaactccgaaagaagcaggaattacttgatcagaagcgcaatgacttccgg
cgtcagttgcataaacttgagagacaaacctcaggtgtgagaggtgatgtaccatctgag
catggtgcaaagagacataagcctgcaactgtagctgatgttggaaaagttgctactccc
aggtctgctgaatctggtactgttgtagcttcgcctctagcagaagtgatgtctgaaagg
aataaatctgcagagaatgtcgatcagcaaagctccaaacaaagtacattcgtggcccct
caggaaccttcaagtttgaagcattcaattcgtcctttggcacctgcaggggcatcattt
gtcatgaatagattcaaattggacaaccgtcccacggcgtttaaaatcattccgccttta
cctataggccttgcaaatgttgctgttttgaaggaacacttctctgattacggagaactt
tctgctgtagagatagaagatgtagagtctagtgactctcttgcatcccaaaattgctca
gctcatatctctttcactacacgcctgtcagctgagagggcatttttgaatggtagatgt
tggcaaggtcacaatttgcagtttacttgggtggtgtctagtaattctagcaatggcaat
ggtgttcgagaaaattccccttctgcttcaaagatgccttcagatgctaaccttcagcct
gcagttgaagtcacacccattgattaccataatgaggcagcctcaaaagatggagaatct
aatattttggatagaaaagaaagtggtggagagcatatggtatcagatgagcatctgcgg
tccagttcgtctgcaatatcttgcgagaaacagtctcctaaaagggatgtttgttga
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