Rhododendron vialii: 131298862
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Entry
131298862 CDS
T09330
Name
(RefSeq) ATP-dependent RNA helicase-like protein DB10
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
rvl
Rhododendron vialii
Pathway
rvl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131298862
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rvl03041
]
131298862
03009 Ribosome biogenesis [BR:
rvl03009
]
131298862
Enzymes [BR:
rvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131298862
Spliceosome [BR:
rvl03041
]
Complex A
U1 snRNP components
U1 related factors
131298862
Complex B
131298862
Ribosome biogenesis [BR:
rvl03009
]
Eukaryotic type
Pre-60S particles
Helicases
131298862
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
131298862
NCBI-ProteinID:
XP_058180345
LinkDB
All DBs
Position
8a:complement(5306106..5314500)
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AA seq
803 aa
AA seq
DB search
MASATATPRYAPEDPTLPKPWKGLVDGKTGYLYYWNPETNITQYEKPIASSRTGSAPPQK
SSAATISSSVQVQQSSQGRHRDSGYDDDDDRYSRGGNATSKLASGTRSYQSGKRGSDHPY
KVPNGEIGAGHVASSGRGQGPSDNGNGPSAESYRRRHEISVSGDKVPAPFTSFEDTGFPP
EILREVHKAGFSAPTPIQAQSWPIALKSRDIVAVAKTGSGKTLGYLLPGFMHLKRLRNNP
QLGPTVLVLSPTRELATQIQEEAVKFGKSSRISSTCLYGGAPKGPQLRDLDRGTDIVVAT
PGRLNDILEMKRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPSDRQTLMYTATWPK
EVRKIAADLLVNPVQVNIGNIDELVANKAITQHVEIMSPMEKQRRLEQILRSLEPGSKVL
IFCTTKKMCDQLTRSLTRQFGAAAIHGDKSQGERDYVLNQFRSGRSPILVATDVAARGLD
IKDIRMVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFLSEQDAKHASDLIKVLEGANQR
IPVELRDMASRGGGMGRPRRKWGSGSGGREGGHGGRNGLSSSGRDGGRGSWGIPDRVGGR
GFDRDSRNSDRYGRSFNDDVDLHGSYHNRVPNERLVRARDGDHRSRSRSRSRSPNKALHR
LVRAGDGADRSSSRSRSRSPKKFPGRGDFRRRAESRSRSRSTDRFDWVLPARERSPIRSS
QKHLAPSYKSDTERGFKNSVDPPPRSSSGGRRKENLKGSDDDEWGKATRGGLNGTGSSYL
GEEGELEEGMIPADEEGMIPADD
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atggcatctgcaaccgccactccccgttatgctcctgaggacccaactcttcccaagcct
tggaagggcctagttgatggtaaaacaggttatctttactattggaatccggagaccaac
attactcagtacgagaagcctattgcatcttcacgtacaggctcagctccaccacagaag
tcatctgctgccactataagttcttctgttcaagttcaacaatcctctcaaggaagacat
cgtgacagtggctatgatgatgatgacgacaggtatagcagaggtggcaatgccacatca
aagcttgcatcaggaacaaggagttatcagagtgggaaaagaggatcagatcatccttac
aaagttcctaatggggaaataggtgctggacatgtagcttcttctggcagaggccaaggg
ccttcagacaatgggaatggtccatctgcggagtcttatcgccgtcggcatgaaataagt
gttagtggagataaagtacccgctccttttacatcatttgaagatactggttttcctccg
gagattcttagagaggtacacaaagctgggttttctgcacctactccaatacaggcacag
tcatggccgattgctcttaaaagtcgtgatattgttgctgtcgccaagacaggttctggt
aaaacgttggggtacttgcttccaggatttatgcatctgaagcgcctccgcaataatcct
caacttggtccgactgttttggttttgtctccaacaagggagctggcaacgcagatacag
gaggaagctgttaagttcggaaaatcgtcaagaatatcgtccacgtgtttgtatggagga
gcaccaaagggccctcaattgagggatttagacagaggtacagatattgtggttgccact
cctggccgcttgaatgatattttagagatgaaaagagtgagcctccgtcaagtctcttac
ttggtgttagatgaggcggatcgaatgctggacatgggctttgagccccagatacgcaag
attgtgaaagaggtgccttctgaccggcagaccctcatgtacactgccacatggcccaag
gaggttcgcaaaattgcggctgatctgctggtcaatcctgttcaggttaacattgggaat
attgatgagctcgttgccaacaaggctattacccagcatgttgaaataatgtctcccatg
gagaaacagaggcgccttgagcagatactgcgatctctagagccaggttccaaagtcctt
atcttttgtacaaccaagaagatgtgtgatcaacttactcgtagcctaactcgccagttt
ggagctgctgctattcatggagataaatctcagggtgagagagattatgtgttgaaccaa
tttaggagtgggaggtctccaattcttgtagccactgatgttgctgctcgtggattagac
atcaaagatatcaggatggttatcaactatgacttccctacgggagtagaggattacgtg
cacaggattggaagaactgggagggcaggtgccaccggggtggctttcacatttttgagc
gaacaagatgcaaagcatgcttcagatctcattaaggttttggaaggagcaaaccagcgt
attccagttgaacttcgcgatatggcttcacgtggtggtggaatgggcaggcctaggcgt
aagtggggttctggctctggtggacgtgaggggggccatggtggacgtaatggtttgtcc
tccagtggaagggatgggggtaggggcagttgggggataccagacagagttggtggccgt
ggttttgaccgtgactccaggaatagtgacaggtatggtcgcagtttcaatgatgatgtg
gatcttcatggaagctaccataatcgggtccctaatgaaaggttggttcgagctcgagat
ggtgatcacagaagcagaagccggagccgaagtagaagcccaaacaaagccctccacagg
ttggttcgagctggggatggtgctgaccgaagtagtagccgtagccgaagtagaagccca
aaaaagtttccaggtaggggagactttcggaggcgggccgagagccgtagccgtagccgt
agcactgacaggtttgattgggttctgccagcccgtgaacgttccccaatccgcagctct
cagaaacatttggcaccttcatacaaaagtgacactgaaaggggattcaaaaattctgtg
gacccacctccacgttcctcatctggtggtcgtaggaaggaaaatctcaagggatcagat
gacgatgagtggggaaaagcaacaagaggtggactgaatggaactgggtcttcgtacttg
ggggaggagggtgaattggaggaaggcatgattccagcggatgaagaaggcatgattcca
gcggatgattaa
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integrated database retrieval system
